RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 NOMO2Q5JPE7 1267 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 C6orf118Q5T5N4 469 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 SLC9A4Q6AI14 798 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 OVOS1Q6IE37 1185 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 CD300LGQ6UXG3 332 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 RTN4RL1Q86UN2 441 aaPredicted RBP14.78□□□□□ -0.04
LIG3-205ENST00000585941 DEFB106AQ8N104 65 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 SCML4Q8N228 414 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 OR2W6PQ8NHA6 318 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 IRGQQ8WZA9 623 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 PGM2Q96G03 612 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 SMOQ99835 787 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 ELAC1Q9H777 363 aaKnown RBP14.78□□□□□ -0.04
LIG3-205ENST00000585941 PRDM10Q9NQV6 1147 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 AAASQ9NRG9 546 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 TMEM161AQ9NX61 479 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 PCNTO95613 3336 aa14.78□□□□□ -0.04
LIG3-205ENST00000585941 BEST1O76090 585 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 TTC4O95801 387 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 RBP3P10745 1247 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 L1CAMP32004 1257 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 SULT1E1P49888 294 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 BCAR1P56945 870 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 DAOAP59103 153 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 DSC1Q08554 894 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 MMRN1Q13201 1228 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 DCAF6Q58WW2 860 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 ZC3H12AQ5D1E8 599 aaKnown RBP14.77□□□□□ -0.04
LIG3-205ENST00000585941 C4orf22Q6V702 233 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 KDM7AQ6ZMT4 941 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 PLD5Q8N7P1 536 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 SLC9A7Q96T83 725 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 NPY6RQ99463 290 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 RTP3Q9BQQ7 232 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 ADAM7Q9H2U9 754 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 CDC42EP4Q9H3Q1 356 aaKnown RBP14.77□□□□□ -0.04
LIG3-205ENST00000585941 CENPHQ9H3R5 247 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 AP4E1Q9UPM8 1137 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 DNAH12Q6ZR08 3092 aa14.77□□□□□ -0.04
LIG3-205ENST00000585941 PITPNM1O00562 1244 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 TRAPPC3O43617 180 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 IFNB1P01574 187 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 PECAM1P16284 738 aaPredicted RBP14.77□□□□□ -0.05
LIG3-205ENST00000585941 NR1D1P20393 614 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 IBSPP21815 317 aaPredicted RBP14.77□□□□□ -0.05
LIG3-205ENST00000585941 IL4RP24394 825 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 BRCC3P46736 316 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 NR2C2P49116 596 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 DMTNQ08495 405 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 RAB6CQ53S08 254 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 ZNF771Q7L3S4 317 aaPredicted RBP14.77□□□□□ -0.05
LIG3-205ENST00000585941 BNIPLQ7Z465 357 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 PPIL6Q8IXY8 311 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 MYLPFQ96A32 169 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 TTC25Q96NG3 672 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 FAM193BQ96PV7 902 aaPredicted RBP14.77□□□□□ -0.05
LIG3-205ENST00000585941 ULBP1Q9BZM6 244 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 RAB6CQ9H0N0 254 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 DHX35Q9H5Z1 703 aaKnown RBP14.77□□□□□ -0.05
LIG3-205ENST00000585941 DMAP1Q9NPF5 467 aaPredicted RBP14.77□□□□□ -0.05
LIG3-205ENST00000585941 SAE1Q9UBE0 346 aaPredicted RBP14.77□□□□□ -0.05
LIG3-205ENST00000585941 TRIM17Q9Y577 477 aa14.77□□□□□ -0.05
LIG3-205ENST00000585941 PTPRDP23468 1912 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.76□□□□□ -0.05
LIG3-205ENST00000585941 CAPN9O14815 690 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 SHOX2O60902 331 aaPredicted RBP14.76□□□□□ -0.05
LIG3-205ENST00000585941 ZNF189O75820 626 aaPredicted RBP14.76□□□□□ -0.05
LIG3-205ENST00000585941 F9P00740 461 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 CAPN2P17655 700 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 ACTN2P35609 894 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 CHKAP35790 457 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 ARL4AP40617 200 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 CDR1P51861 262 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 YWHAHQ04917 246 aaPredicted RBP14.76□□□□□ -0.05
LIG3-205ENST00000585941 XRCC4Q13426 336 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 CCDC142Q17RM4 750 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 PPP6R3Q5H9R7 873 aaPredicted RBP14.76□□□□□ -0.05
LIG3-205ENST00000585941 CLLU1OSQ5K130 101 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 RNASEH2BQ5TBB1 312 aaKnown RBP14.76□□□□□ -0.05
LIG3-205ENST00000585941 KCTD16Q68DU8 428 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 DARS2Q6PI48 645 aaKnown RBP14.76□□□□□ -0.05
LIG3-205ENST00000585941 C4orf50Q6ZRC1 276 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 BZW1Q7L1Q6 419 aaKnown RBP14.76□□□□□ -0.05
LIG3-205ENST00000585941 FAM126BQ8IXS8 530 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 ZMIZ2Q8NF64 920 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 PCDH19Q8TAB3 1148 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 LINC01599Q8WXQ3 324 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 APBB2Q92870 758 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 PGAP3Q96FM1 320 aaPredicted RBP14.76□□□□□ -0.05
LIG3-205ENST00000585941 RBM15Q96T37 977 aaKnown RBP eCLIP14.76□□□□□ -0.05
LIG3-205ENST00000585941 PKMYT1Q99640 499 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 CCDC77Q9BR77 488 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 NRDE2Q9H7Z3 1164 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 GPATCH2LQ9NWQ4 482 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 FZD10Q9ULW2 581 aa14.76□□□□□ -0.05
LIG3-205ENST00000585941 BCLAF3A2AJT9 711 aaKnown RBP14.75□□□□□ -0.05
LIG3-205ENST00000585941 HHLA1C9JL84 531 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 H7C0C1 242 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 I3L4J1 428 aa14.75□□□□□ -0.05
LIG3-205ENST00000585941 ZBED1O96006 694 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms