RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	LINC00597	Q9H2U6	94 aa		14.03	□□□□□ -0.16
SREBF1-223	ENST00000584760	NMUR1	Q9HB89	426 aa		14.03	□□□□□ -0.16
SREBF1-223	ENST00000584760	OSER1	Q9NX31	292 aa		14.03	□□□□□ -0.16
SREBF1-223	ENST00000584760	CFAP97	Q9P2B7	532 aa		14.03	□□□□□ -0.16
SREBF1-223	ENST00000584760	ANGPTL2	Q9UKU9	493 aa		14.03	□□□□□ -0.16
SREBF1-223	ENST00000584760	USP3	Q9Y6I4	520 aa		14.03	□□□□□ -0.16
SREBF1-223	ENST00000584760		O00370	1275 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	TRDMT1	O14717	391 aa	Known RBP	14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	SCAMP3	O14828	347 aa	Known RBP	14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	AXIN1	O15169	862 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	NFATC1	O95644	943 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	BCAT1	P54687	386 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	AASDH	Q4L235	1098 aa	Predicted RBP	14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	SGO2	Q562F6	1265 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	DGKK	Q5KSL6	1271 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	NAIF1	Q69YI7	327 aa	Predicted RBP	14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	FSTL4	Q6MZW2	842 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	PIGZ	Q86VD9	579 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	GPT2	Q8TD30	523 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	DDX1	Q92499	740 aa	Known RBP	14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	KREMEN1	Q96MU8	473 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	IPO9	Q96P70	1041 aa	Known RBP	14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	INTS2	Q9H0H0	1204 aa	Known RBP	14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	C2orf42	Q9NWW7	574 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	RALY	Q9UKM9	306 aa	Known RBP	14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	TSPAN16	Q9UKR8	245 aa		14.02	□□□□□ -0.17
SREBF1-223	ENST00000584760	MAP1B	P46821	2468 aa	Known RBP	14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760		A0A1W2PQH9	124 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	E2F8	A0AVK6	867 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	FOXD2	O60548	495 aa	Predicted RBP	14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	CYP17A1	P05093	508 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	PAEP	P09466	180 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	VDR	P11473	427 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	CD19	P15391	556 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	ZNF132	P52740	706 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	AMPD2	Q01433	879 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	SF3A2	Q15428	464 aa	Known RBP	14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	CCDC6	Q16204	474 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	RAB41	Q5JT25	222 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	TMEM270	Q6UE05	265 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	RBM43	Q6ZSC3	357 aa	Known RBP	14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	RRAGA	Q7L523	313 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	SCD5	Q86SK9	330 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	EHBP1	Q8NDI1	1231 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	TFAP2B	Q92481	460 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	ZSWIM1	Q9BR11	485 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	UBXN6	Q9BZV1	441 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	ARRDC1-AS1	Q9H2J1	176 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	FBRSL1	Q9HCM7	1045 aa	Known RBP	14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	EML5	Q05BV3	1969 aa		14.01	□□□□□ -0.17
SREBF1-223	ENST00000584760	CHD8	Q9HCK8	2581 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	RNF225	M0QZC1	329 aa	Predicted RBP	14	□□□□□ -0.17
SREBF1-223	ENST00000584760	TULP2	O00295	520 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	SLC9A3R1	O14745	358 aa	Predicted RBP	14	□□□□□ -0.17
SREBF1-223	ENST00000584760	XPO1	O14980	1071 aa	Known RBP	14	□□□□□ -0.17
SREBF1-223	ENST00000584760	PAPSS2	O95340	614 aa	Predicted RBP	14	□□□□□ -0.17
SREBF1-223	ENST00000584760	ERCC5	P28715	1186 aa	Predicted RBP	14	□□□□□ -0.17
SREBF1-223	ENST00000584760	PDE4C	Q08493	712 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	BST2	Q10589	180 aa	Known RBP	14	□□□□□ -0.17
SREBF1-223	ENST00000584760	PKDCC	Q504Y2	493 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	KLHDC10	Q6PID8	442 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	TRIM65	Q6PJ69	517 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	SYNPO	Q8N3V7	929 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	ZNF276	Q8N554	614 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	C12orf50	Q8NA57	414 aa	Predicted RBP	14	□□□□□ -0.17
SREBF1-223	ENST00000584760	RBBP8NL	Q8NC74	664 aa	Predicted RBP	14	□□□□□ -0.17
SREBF1-223	ENST00000584760	EZH1	Q92800	747 aa	Predicted RBP	14	□□□□□ -0.17
SREBF1-223	ENST00000584760	WBP2	Q969T9	261 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	P2RY13	Q9BPV8	354 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	KLF16	Q9BXK1	252 aa	Predicted RBP	14	□□□□□ -0.17
SREBF1-223	ENST00000584760	NACA2	Q9H009	215 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	THAP9	Q9H5L6	903 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	KIAA1257	Q9ULG3	409 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	14	□□□□□ -0.17
SREBF1-223	ENST00000584760	CNTN6	Q9UQ52	1028 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	PCDHB4	Q9Y5E5	795 aa		14	□□□□□ -0.17
SREBF1-223	ENST00000584760	GTPBP10	A4D1E9	387 aa	Known RBP	13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	GREM1	O60565	184 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	TBX18	O95935	607 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	EGF	P01133	1207 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	SETSIP	P0DME0	302 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	RARG	P13631	454 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	DRD1	P21728	446 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	PML	P29590	882 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	ATP5C1	P36542	298 aa	Known RBP	13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	OPRD1	P41143	372 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	PLA2G4A	P47712	749 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	PSEN1	P49768	467 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	GALK1	P51570	392 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	SLC8A3	P57103	927 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	GRSF1	Q12849	480 aa	Known RBP eCLIP	13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	NR1H3	Q13133	447 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	PKN3	Q6P5Z2	889 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	LCLAT1	Q6UWP7	414 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	BHLHA9	Q7RTU4	235 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	ADGRG2	Q8IZP9	1017 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	CD101	Q93033	1021 aa		13.99	□□□□□ -0.17
SREBF1-223	ENST00000584760	OTUB2	Q96DC9	234 aa		13.99	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms