RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 E7ENQ6 273 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 ZBED1O96006 694 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 LTFP02788 710 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 EN2P19622 333 aaPredicted RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 NOS2P35228 1153 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 GRIK1P39086 918 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 FNTAP49354 379 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 CARSP49589 748 aaKnown RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 ARSEP51690 589 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 ATXN1P54253 815 aaKnown RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 CDH6P55285 790 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 WDR5P61964 334 aaKnown RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 YWHAZP63104 245 aaKnown RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 PITX1P78337 314 aaPredicted RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 KRT81Q14533 505 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 TRADDQ15628 312 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 NFE2Q16621 373 aaPredicted RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 TAZQ16635 292 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 MAP9Q49MG5 647 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 DCAF6Q58WW2 860 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 RTP2Q5QGT7 225 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 SPOUT1Q5T280 376 aaKnown RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 OTUD1Q5VV17 481 aaPredicted RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 BHLHA9Q7RTU4 235 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 TAS1R1Q7RTX1 841 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 JAMLQ86YT9 394 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 RFX6Q8HWS3 928 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 SCN4BQ8IWT1 228 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 CCDC105Q8IYK2 499 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 KCTD6Q8NC69 237 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 CMASQ8NFW8 434 aaPredicted RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 TEKT4Q8WW24 435 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 IFT81Q8WYA0 676 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 RUNDC3BQ96NL0 473 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 FAM118BQ9BPY3 351 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 SNRNP25Q9BV90 132 aaKnown RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 MCOLN1Q9GZU1 580 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 DPH5Q9H2P9 285 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 RC3H2Q9HBD1 1191 aaKnown RBP10.98□□□□□ -0.65
SS18-217ENST00000580958 POPDC2Q9HBU9 364 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 IL23AQ9NPF7 189 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.98□□□□□ -0.65
SS18-217ENST00000580958 PCDHB5Q9Y5E4 795 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 PLXNA4Q9HCM2 1894 aa10.98□□□□□ -0.65
SS18-217ENST00000580958 SYNJ2BP-COX16A0A087WUM0 186 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 H7C4K7 107 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 EFCAB14O75071 495 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 TJP3O95049 919 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 FYNP06241 537 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 TNNT3P45378 269 aaPredicted RBP10.97□□□□□ -0.65
SS18-217ENST00000580958 GPR15P49685 360 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 ARPP19P56211 112 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 IFRD2Q12894 506 aaPredicted RBP10.97□□□□□ -0.65
SS18-217ENST00000580958 DPYSL3Q14195 570 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 CA9Q16790 459 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 SLC25A52Q3SY17 297 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 BOLA3Q53S33 107 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 ZC3H12AQ5D1E8 599 aaKnown RBP10.97□□□□□ -0.65
SS18-217ENST00000580958 TFDP3Q5H9I0 405 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 SDHAF4Q5VUM1 108 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 SYPL2Q5VXT5 272 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 PRSS55Q6UWB4 352 aaPredicted RBP10.97□□□□□ -0.65
SS18-217ENST00000580958 STRADAQ7RTN6 431 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 DDX42Q86XP3 938 aaKnown RBP eCLIP10.97□□□□□ -0.65
SS18-217ENST00000580958 SCML4Q8N228 414 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 CCDC185Q8N715 623 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 AENQ8WTP8 325 aaKnown RBP10.97□□□□□ -0.65
SS18-217ENST00000580958 IRGQQ8WZA9 623 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 HAUS1Q96CS2 278 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 ZNF689Q96CS4 500 aaPredicted RBP10.97□□□□□ -0.65
SS18-217ENST00000580958 FUBP3Q96I24 572 aaKnown RBP eCLIP10.97□□□□□ -0.65
SS18-217ENST00000580958 IGSF21Q96ID5 467 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 PGLYRP2Q96PD5 576 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 NPY6RQ99463 290 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 TTPALQ9BTX7 342 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 VN1R3Q9BXE9 311 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 CALN1Q9BXU9 219 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 TRIM31Q9BZY9 425 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 RAB17Q9H0T7 212 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 PNPLA8Q9NP80 782 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 COX16Q9P0S2 106 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 CALCOCO1Q9P1Z2 691 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 RASAL2Q9UJF2 1139 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 STAP1Q9ULZ2 295 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 NFU1Q9UMS0 254 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 NAALADL1Q9UQQ1 740 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 SHROOM3Q8TF72 1996 aa10.97□□□□□ -0.65
SS18-217ENST00000580958 NUP205Q92621 2012 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 M0QYT0 321 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 TNFRSF10BO14763 440 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 CAPN9O14815 690 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 MDM4O15151 490 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 DAPK3O43293 454 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 TBC1D4O60343 1298 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 CST8O60676 142 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 ENDOD1O94919 500 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 EFEMP2O95967 443 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 CPB1P15086 417 aa10.96□□□□□ -0.65
SS18-217ENST00000580958 ALDH7A1P49419 539 aaKnown RBP10.96□□□□□ -0.65
SS18-217ENST00000580958 EPHB4P54760 987 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms