RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 TRIM2Q9C040 744 aa6.86□□□□□ -1.31
COPS3-216ENST00000579716 UNKQ9C0B0 810 aaKnown RBP6.86□□□□□ -1.31
COPS3-216ENST00000579716 EPS8L2Q9H6S3 715 aa6.86□□□□□ -1.31
COPS3-216ENST00000579716 EIF2B3Q9NR50 452 aaKnown RBP6.86□□□□□ -1.31
COPS3-216ENST00000579716 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.86□□□□□ -1.31
COPS3-216ENST00000579716 LRFN1Q9P244 771 aa6.86□□□□□ -1.31
COPS3-216ENST00000579716 MBD1Q9UIS9 605 aaPredicted RBP6.86□□□□□ -1.31
COPS3-216ENST00000579716 PIN4Q9Y237 131 aaKnown RBP6.86□□□□□ -1.31
COPS3-216ENST00000579716 CBY1Q9Y3M2 126 aa6.86□□□□□ -1.31
COPS3-216ENST00000579716 PCDHA5Q9Y5H7 936 aa6.86□□□□□ -1.31
COPS3-216ENST00000579716 ATP23Q9Y6H3 246 aa6.86□□□□□ -1.31
COPS3-216ENST00000579716 CCDC180Q9P1Z9 1646 aa6.86□□□□□ -1.31
COPS3-216ENST00000579716 SBNO1A3KN83 1393 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 A0A1B0GUA9 196 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 H0YCG3 227 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 KRIT1O00522 736 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 PCDHGA12O60330 932 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 BEST1O76090 585 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 OR5F1O95221 314 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 PRG2P13727 222 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 HNRNPLP14866 589 aaKnown RBP eCLIP6.85□□□□□ -1.31
COPS3-216ENST00000579716 GALP22466 123 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 ANXA13P27216 316 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 PLCD1P51178 756 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 GBX2P52951 348 aaPredicted RBP6.85□□□□□ -1.31
COPS3-216ENST00000579716 TPM4P67936 248 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 RPL6Q02878 288 aaKnown RBP6.85□□□□□ -1.31
COPS3-216ENST00000579716 PRKCZQ05513 592 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 HNRNPDQ14103 355 aaKnown RBP6.85□□□□□ -1.31
COPS3-216ENST00000579716 SNX17Q15036 470 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 ZRSR1Q15695 479 aaKnown RBP6.85□□□□□ -1.31
COPS3-216ENST00000579716 TSTQ16762 297 aaKnown RBP6.85□□□□□ -1.31
COPS3-216ENST00000579716 TMEM201Q5SNT2 666 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 SHEQ5VZ18 495 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 TAF2Q6P1X5 1199 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 ERICH5Q6P6B1 374 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 AAGABQ6PD74 315 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 CLEC2AQ6UVW9 174 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 NLRP9Q7RTR0 991 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 UBE3BQ7Z3V4 1068 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 NANOGNBQ7Z5D8 188 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 TADA2BQ86TJ2 420 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 GGNQ86UU5 652 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 ERO1BQ86YB8 467 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 GRAMD1CQ8IYS0 662 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 ATG16L2Q8NAA4 619 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 LINS1Q8NG48 757 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 CAGE1Q8TC20 777 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 CHTF18Q8WVB6 975 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 BRI3BPQ8WY22 251 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 PHKBQ93100 1093 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 FUT8Q9BYC5 575 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 API5Q9BZZ5 524 aaKnown RBP6.85□□□□□ -1.31
COPS3-216ENST00000579716 BICC1Q9H694 974 aaKnown RBP6.85□□□□□ -1.31
COPS3-216ENST00000579716 GORASP2Q9H8Y8 452 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 ZMAT3Q9HA38 289 aaKnown RBP6.85□□□□□ -1.31
COPS3-216ENST00000579716 UCKL1Q9NWZ5 548 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 EHD2Q9NZN4 543 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 MORF4L1Q9UBU8 362 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 TSPYL4Q9UJ04 414 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 CAMK2AQ9UQM7 478 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 PCDHGA9Q9Y5G4 932 aaKnown RBP6.85□□□□□ -1.31
COPS3-216ENST00000579716 PCDHGA8Q9Y5G5 932 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 PCDHGA7Q9Y5G6 932 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 PCDHGA6Q9Y5G7 932 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 PCDHGA3Q9Y5H0 932 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 PCDHGA2Q9Y5H1 932 aa6.85□□□□□ -1.31
COPS3-216ENST00000579716 A0A1B0GUL7 405 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 TARSL2A2RTX5 802 aaKnown RBP6.84□□□□□ -1.31
COPS3-216ENST00000579716 OTOL1A6NHN0 477 aaPredicted RBP6.84□□□□□ -1.31
COPS3-216ENST00000579716 HSBP1L1C9JCN9 74 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 H0YAE9 185 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 CASC3O15234 703 aaKnown RBP6.84□□□□□ -1.31
COPS3-216ENST00000579716 DNAJA2O60884 412 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 FKBP9O95302 570 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 LARGE1O95461 756 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 GGPS1O95749 300 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 SCGB1D1O95968 90 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 GSNP06396 782 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 CSH1P0DML2 217 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 CSH2P0DML3 217 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 ACADMP11310 421 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 TLX1P31314 330 aaPredicted RBP6.84□□□□□ -1.31
COPS3-216ENST00000579716 PPARGP37231 505 aaPredicted RBP6.84□□□□□ -1.31
COPS3-216ENST00000579716 NT5C2P49902 561 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 SCNN1GP51170 649 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 ZNF41P51814 821 aaPredicted RBP6.84□□□□□ -1.31
COPS3-216ENST00000579716 ARHGDIBP52566 201 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 ITGA8P53708 1063 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 RARSP54136 660 aaKnown RBP6.84□□□□□ -1.31
COPS3-216ENST00000579716 RAD23AP54725 363 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 ALDH18A1P54886 795 aaKnown RBP6.84□□□□□ -1.31
COPS3-216ENST00000579716 CARD18P57730 90 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 CREB5Q02930 508 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 MAP4K2Q12851 820 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 RPA4Q13156 261 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 BYSLQ13895 437 aaKnown RBP6.84□□□□□ -1.31
COPS3-216ENST00000579716 PTK2BQ14289 1009 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 PFKFB4Q16877 469 aa6.84□□□□□ -1.31
COPS3-216ENST00000579716 CTXN3Q4LDR2 81 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms