RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 TEKT4Q8WW24 435 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 LHX5Q9H2C1 402 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 PLLPQ9Y342 182 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 E2F8A0AVK6 867 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 UBAP2LQ14157 1087 aaKnown RBP17.75■□□□□ 0.43
VPS53-215ENST00000573028 SURF1Q15526 300 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 C16orf46Q6P387 395 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 SH2D5Q6ZV89 423 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 ARHGAP24Q8N264 748 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 TMEM176AQ96HP8 235 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 LRCH1Q9Y2L9 728 aa17.75■□□□□ 0.43
VPS53-215ENST00000573028 DNAJC6O75061 913 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 TGDSO95455 350 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 KCNA3P22001 575 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 SP100P23497 879 aaPredicted RBP17.74■□□□□ 0.43
VPS53-215ENST00000573028 MRPS5P82675 430 aaKnown RBP17.74■□□□□ 0.43
VPS53-215ENST00000573028 ZRSR2Q15696 482 aaKnown RBP17.74■□□□□ 0.43
VPS53-215ENST00000573028 HSDL1Q3SXM5 330 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 LGSNQ5TDP6 509 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 IER5Q5VY09 327 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 DCAF15Q66K64 600 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 CATSPERGQ6ZRH7 1159 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 CRLF3Q8IUI8 442 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 UNC5BQ8IZJ1 945 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 MPP5Q8N3R9 675 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 PLD5Q8N7P1 536 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 NETO2Q8NC67 525 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 SEPT1Q8WYJ6 367 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 EBF4Q9BQW3 602 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 APOL6Q9BWW8 343 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 KLC2Q9H0B6 622 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 VCXQ9H320 206 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 MINDY3Q9H8M7 445 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 CNTN3Q9P232 1028 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 PAK5Q9P286 719 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 SLC17A6Q9P2U8 582 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 SCOCQ9UIL1 159 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 RPL26L1Q9UNX3 145 aaKnown RBP17.74■□□□□ 0.43
VPS53-215ENST00000573028 GRIA1P42261 906 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 OAZ1P54368 228 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 TAZQ16635 292 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 LRRC36Q1X8D7 754 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 ATG16L1Q676U5 607 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 FAM183BPQ6ZVS7 135 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 RNF157Q96PX1 679 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 MMP19Q99542 508 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 C20orf27Q9GZN8 174 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 USP29Q9HBJ7 922 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 DCAF8L1A6NGE4 600 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 ARHGAP42A6NI28 874 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 LACTBL1A8MY62 500 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 PRR5-ARHGAP8B1AHC4 643 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 CIB2O75838 187 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 USP1O94782 785 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 ZNF143P52747 638 aaPredicted RBP17.74■□□□□ 0.43
VPS53-215ENST00000573028 CRADDP78560 199 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 ARHGAP8P85298 464 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 EN1Q05925 392 aaPredicted RBP17.74■□□□□ 0.43
VPS53-215ENST00000573028 CA9Q16790 459 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 C1orf146Q5VVC0 180 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 JADE1Q6IE81 842 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 CAND1Q86VP6 1230 aaKnown RBP17.74■□□□□ 0.43
VPS53-215ENST00000573028 KBTBD2Q8IY47 623 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 CNPY3Q9BT09 278 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 MAGEB5Q9BZ81 275 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 PHACTR1Q9C0D0 580 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 POPDC2Q9HBU9 364 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 ARHGEF4Q9NR80 690 aa17.74■□□□□ 0.43
VPS53-215ENST00000573028 SPECC1L-ADORA2AF8WAN1 911 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 ZCCHC18P0CG32 403 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 GNAT1P11488 350 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 GMPSP49915 693 aaPredicted RBP17.73■□□□□ 0.43
VPS53-215ENST00000573028 KRT72Q14CN4 511 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 HSF5Q4G112 596 aaPredicted RBP17.73■□□□□ 0.43
VPS53-215ENST00000573028 POU5F2Q8N7G0 328 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 MIS12Q9H081 205 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 CDT1Q9H211 546 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 HOXC10Q9NYD6 342 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 SMAPO00193 183 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 APOL1O14791 398 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 CHADO15335 359 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 LYPLA1O75608 230 aaPredicted RBP17.73■□□□□ 0.43
VPS53-215ENST00000573028 RFPL1O75677 317 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 GPD2P43304 727 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 C6orf163Q5TEZ5 329 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 MAP1SQ66K74 1059 aaPredicted RBP17.73■□□□□ 0.43
VPS53-215ENST00000573028 UNC5AQ6ZN44 842 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 RIPOR1Q6ZS17 1223 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 MAP7D3Q8IWC1 876 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 SCUBE1Q8IWY4 988 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 SHKBP1Q8TBC3 707 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 SH3TC2Q8TF17 1288 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 DEPDC1BQ8WUY9 529 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 WWP1Q9H0M0 922 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 ETNK2Q9NVF9 386 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 STK32BQ9NY57 414 aa17.73■□□□□ 0.43
VPS53-215ENST00000573028 STX18Q9P2W9 335 aaKnown RBP17.73■□□□□ 0.43
VPS53-215ENST00000573028 COL11A1P12107 1806 aaPredicted RBP17.72■□□□□ 0.43
VPS53-215ENST00000573028 ABLIM1O14639 778 aa17.72■□□□□ 0.43
VPS53-215ENST00000573028 KRT38O76015 456 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms