RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 HPSEQ9Y251 543 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 SSUH2Q9Y2M2 353 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 R3HCC1Q9Y3T6 440 aaKnown RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 TMEM131Q92545 1883 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 PKD1L2Q7Z442 2459 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 DMXL2Q8TDJ6 3036 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 MUC22E2RYF6 1773 aaPredicted RBP7.12□□□□□ -1.27
VPS53-213ENST00000572334 CELSR3Q9NYQ7 3312 aa7.12□□□□□ -1.27
VPS53-213ENST00000572334 FAM237AA0A1B0GTK4 181 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 A0A1B0GVL5 298 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 A0A1W2PQF6 199 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 PDXKO00764 312 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 SLC9A3R1O14745 358 aaPredicted RBP7.11□□□□□ -1.27
VPS53-213ENST00000572334 PHACTR2O75167 634 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 TULP3O75386 442 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 AP1G2O75843 785 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 TOP3BO95985 862 aaKnown RBP7.11□□□□□ -1.27
VPS53-213ENST00000572334 ADH1CP00326 375 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 HLA-DRAP01903 254 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 NR3C1P04150 777 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 APODP05090 189 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 PFKFB1P16118 471 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 GABRG2P18507 467 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 GBP1P32455 592 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 GRIA2P42262 883 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 PTGER3P43115 390 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 TNFRSF4P43489 277 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 NDST1P52848 882 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 AP3M2P53677 418 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 MAP3K7CLP57077 242 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 PPP3CAQ08209 521 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 INCA1Q0VD86 236 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 BIRC3Q13489 604 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 ST3GAL2Q16842 350 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 HSF5Q4G112 596 aaPredicted RBP7.11□□□□□ -1.27
VPS53-213ENST00000572334 USP39Q53GS9 565 aaKnown RBP7.11□□□□□ -1.27
VPS53-213ENST00000572334 ATL3Q6DD88 541 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 PSAPL1Q6NUJ1 521 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 CLEC20AQ6ZU45 233 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 HTR3DQ70Z44 454 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 DDX42Q86XP3 938 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS53-213ENST00000572334 TERB1Q8NA31 727 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 PDZD8Q8NEN9 1154 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 TMC2Q8TDI7 906 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 OTUB2Q96DC9 234 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 ACOX2Q99424 681 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 CD93Q9NPY3 652 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 CYLDQ9NQC7 956 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 ARHGEF4Q9NR80 690 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 SPHK2Q9NRA0 654 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 COMMD8Q9NX08 183 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 FAM13BQ9NYF5 915 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 TBC1D14Q9P2M4 693 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 ANGPTL2Q9UKU9 493 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 TRAF3IP3Q9Y228 551 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 STARD13Q9Y3M8 1113 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 CACNA1GO43497 2377 aa7.11□□□□□ -1.27
VPS53-213ENST00000572334 DOCK9Q9BZ29 2069 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 PRRT4C9JH25 899 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 IKBKBO14920 756 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 MDM4O15151 490 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 MAPK13O15264 365 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 CYP26A1O43174 497 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 CACNG3O60359 315 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 TLR5O60602 858 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 RPN1P04843 607 aaKnown RBP7.1□□□□□ -1.27
VPS53-213ENST00000572334 CISD3P0C7P0 127 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 TRIM49P0CI25 452 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 TRIM49CP0CI26 452 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 IRF1P10914 325 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 CMA1P23946 247 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 ME1P48163 572 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 GAD2Q05329 585 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 DPYDQ12882 1025 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 NFIL3Q16649 462 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 SGSM1Q2NKQ1 1148 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 ZCWPW2Q504Y3 356 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 EOGTQ5NDL2 527 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 EGFLAMQ63HQ2 1017 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 KIAA1211LQ6NV74 962 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 Q6ZNB5 142 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 TOGARAM2Q6ZUX3 1019 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 SCD5Q86SK9 330 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 C11orf74Q86VG3 221 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 UNC93AQ86WB7 457 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 TMEFF1Q8IYR6 380 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 CCDC26Q8TAB7 109 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 GOLGA5Q8TBA6 731 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 TAS1R2Q8TE23 839 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 PIGKQ92643 395 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 TNIP3Q96KP6 325 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 HNRNPABQ99729 332 aaKnown RBP7.1□□□□□ -1.27
VPS53-213ENST00000572334 MED10Q9BTT4 135 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 FSCN3Q9NQT6 498 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.1□□□□□ -1.27
VPS53-213ENST00000572334 FAM49BQ9NUQ9 324 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.1□□□□□ -1.27
VPS53-213ENST00000572334 MARK1Q9P0L2 795 aa7.1□□□□□ -1.27
VPS53-213ENST00000572334 EVLQ9UI08 416 aaPredicted RBP7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms