RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ETV2O00321 342 aaPredicted RBP6.67□□□□□ -1.34
VPS53-212ENST00000572259 KPNA5O15131 536 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 NCK2O43639 380 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 NDUFB10O96000 172 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 TOP1P11387 765 aaKnown RBP6.67□□□□□ -1.34
VPS53-212ENST00000572259 MYCLP12524 364 aaPredicted RBP6.67□□□□□ -1.34
VPS53-212ENST00000572259 PTGS1P23219 599 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 RGS2P41220 211 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 STAT2P52630 851 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 COPAP53621 1224 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 PRKCZQ05513 592 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 EPHA7Q15375 998 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 ANO6Q4KMQ2 910 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 DNAJC21Q5F1R6 531 aaKnown RBP6.67□□□□□ -1.34
VPS53-212ENST00000572259 CFAP58Q5T655 872 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 TIGD7Q6NT04 549 aaPredicted RBP6.67□□□□□ -1.34
VPS53-212ENST00000572259 PLBD1Q6P4A8 553 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 ZNF449Q6P9G9 518 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 CPLX2Q6PUV4 134 aaKnown RBP6.67□□□□□ -1.34
VPS53-212ENST00000572259 LIPIQ6XZB0 460 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 FRMD7Q6ZUT3 714 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 GPR142Q7Z601 462 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 STK32CQ86UX6 486 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 SYTL1Q8IYJ3 562 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 SHCBP1Q8NEM2 672 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 IGDCC4Q8TDY8 1250 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 PHKBQ93100 1093 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 SIGLEC10Q96LC7 697 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 C16orf92Q96LL3 132 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 CLIC6Q96NY7 704 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 ASB2Q96Q27 587 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 TUBGCP5Q96RT8 1024 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 BAG1Q99933 345 aaPredicted RBP6.67□□□□□ -1.34
VPS53-212ENST00000572259 UBAC1Q9BSL1 405 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 SPATC1LQ9H0A9 340 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 JMJD4Q9H9V9 463 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 GCM1Q9NP62 436 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 VPS45Q9NRW7 570 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 OLA1Q9NTK5 396 aaKnown RBP6.67□□□□□ -1.34
VPS53-212ENST00000572259 EPS15L1Q9UBC2 864 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 RNF114Q9Y508 228 aa6.67□□□□□ -1.34
VPS53-212ENST00000572259 GREB1LQ9C091 1923 aaPredicted RBP6.67□□□□□ -1.34
VPS53-212ENST00000572259 MYH6P13533 1939 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 UBA6A0AVT1 1052 aaPredicted RBP6.66□□□□□ -1.34
VPS53-212ENST00000572259 ZNF839A8K0R7 811 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 VWA5AO00534 786 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 NFIBO00712 420 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 FFAR2O15552 330 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 PAX4O43316 350 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 PLA2G6O60733 806 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 HMGCRP04035 888 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 DNTTP04053 509 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 FCER1AP12319 257 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 RPL17P18621 184 aaKnown RBP6.66□□□□□ -1.34
VPS53-212ENST00000572259 CYP2B6P20813 491 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 LIFRP42702 1097 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 LIMS1P48059 325 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 MAN2A2P49641 1150 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 RGS19P49795 217 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 AGFG1P52594 562 aaKnown RBP6.66□□□□□ -1.34
VPS53-212ENST00000572259 CNN3Q15417 329 aaKnown RBP6.66□□□□□ -1.34
VPS53-212ENST00000572259 SKIDA1Q1XH10 827 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 TTC38Q5R3I4 469 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 MFSD14CQ5VZR4 134 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 ESRP1Q6NXG1 681 aaKnown RBP6.66□□□□□ -1.34
VPS53-212ENST00000572259 APOA5Q6Q788 366 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 NPNTQ6UXI9 565 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 USP45Q70EL2 814 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 RALYLQ86SE5 291 aaKnown RBP6.66□□□□□ -1.34
VPS53-212ENST00000572259 LRRTM4Q86VH4 590 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 PROSER1Q86XN7 944 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 ANKRD13BQ86YJ7 626 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 PHYKPLQ8IUZ5 450 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 ABRAQ8N0Z2 381 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 CALML6Q8TD86 181 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 ZNF333Q96JL9 665 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 ZDHHC5Q9C0B5 715 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 ZMAT4Q9H898 229 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 KAT14Q9H8E8 782 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 TXNRD2Q9NNW7 524 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 INCENPQ9NQS7 918 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 DLL4Q9NR61 685 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 IRAK4Q9NWZ3 460 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 BTBD7Q9P203 1132 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 ARHGAP20Q9P2F6 1191 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 SEL1LQ9UBV2 794 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 GABRQQ9UN88 632 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 ADAMTS5Q9UNA0 930 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 PCDHGB2Q9Y5G2 931 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 COL11A1P12107 1806 aaPredicted RBP6.66□□□□□ -1.34
VPS53-212ENST00000572259 SMCHD1A6NHR9 2005 aa6.66□□□□□ -1.34
VPS53-212ENST00000572259 BAZ2BQ9UIF8 2168 aaKnown RBP6.65□□□□□ -1.34
VPS53-212ENST00000572259 LAMA4Q16363 1823 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 TCAF2A6NFQ2 919 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 TRIM64CA6NLI5 447 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 TMEM232C9JQI7 657 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 P4HA2O15460 535 aa6.65□□□□□ -1.34
VPS53-212ENST00000572259 PARP1P09874 1014 aaKnown RBP6.65□□□□□ -1.34
VPS53-212ENST00000572259 IGFBP6P24592 240 aaPredicted RBP6.65□□□□□ -1.34
VPS53-212ENST00000572259 CTGFP29279 349 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms