RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 GRIA1P42261 906 aa15.02■□□□□ -0
VPS35-210ENST00000568784 CLCN3P51790 818 aa15.02■□□□□ -0
VPS35-210ENST00000568784 BTKQ06187 659 aa15.02■□□□□ -0
VPS35-210ENST00000568784 AP1B1Q10567 949 aa15.02■□□□□ -0
VPS35-210ENST00000568784 MMEL1Q495T6 779 aa15.02■□□□□ -0
VPS35-210ENST00000568784 KBTBD2Q8IY47 623 aa15.02■□□□□ -0
VPS35-210ENST00000568784 NMD3Q96D46 503 aaKnown RBP15.02■□□□□ -0
VPS35-210ENST00000568784 PAK5Q9P286 719 aa15.02■□□□□ -0
VPS35-210ENST00000568784 FARP1Q9Y4F1 1045 aaPredicted RBP15.02■□□□□ -0
VPS35-210ENST00000568784 E9PBE3 544 aa15.02■□□□□ -0
VPS35-210ENST00000568784 OGTO15294 1046 aa15.02■□□□□ -0
VPS35-210ENST00000568784 KLHL41O60662 606 aa15.02■□□□□ -0
VPS35-210ENST00000568784 TYK2P29597 1187 aa15.02■□□□□ -0
VPS35-210ENST00000568784 STIP1P31948 543 aaKnown RBP15.02■□□□□ -0
VPS35-210ENST00000568784 RANBP1P43487 201 aa15.02■□□□□ -0
VPS35-210ENST00000568784 DRICH1Q6PGQ1 229 aaPredicted RBP15.02■□□□□ -0
VPS35-210ENST00000568784 SLC7A8Q9UHI5 535 aa15.02■□□□□ -0
VPS35-210ENST00000568784 AIM2O14862 343 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 EGFRP00533 1210 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 ATP6V1B1P15313 513 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 GPD1P21695 349 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 EIF4BP23588 611 aaKnown RBP15.02□□□□□ -0.01
VPS35-210ENST00000568784 SDC4P31431 198 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 MED21Q13503 144 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 AMHR2Q16671 573 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 CTC1Q2NKJ3 1217 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 EEF1DP3Q658K8 133 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 SULF1Q8IWU6 871 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 PHC3Q8NDX5 983 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 PTCD3Q96EY7 689 aaKnown RBP15.02□□□□□ -0.01
VPS35-210ENST00000568784 CYTH4Q9UIA0 394 aa15.02□□□□□ -0.01
VPS35-210ENST00000568784 ADCY3O60266 1144 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 CSH1P0DML2 217 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 CSH2P0DML3 217 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 CHRM1P11229 460 aaPredicted RBP15.01□□□□□ -0.01
VPS35-210ENST00000568784 PTPN11Q06124 597 aaPredicted RBP15.01□□□□□ -0.01
VPS35-210ENST00000568784 DNAL1Q4LDG9 190 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 ABHD15Q6UXT9 468 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 C12orf29Q8N999 325 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 RDM1Q8NG50 284 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 SHKBP1Q8TBC3 707 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 TUBGCP5Q96RT8 1024 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 ZNF212Q9UDV6 495 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 MICAL2O94851 1124 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 PGM3O95394 542 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 TCN1P20061 433 aaPredicted RBP15.01□□□□□ -0.01
VPS35-210ENST00000568784 GSTT1P30711 240 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 TCF7P36402 384 aaPredicted RBP15.01□□□□□ -0.01
VPS35-210ENST00000568784 YWHAZP63104 245 aaKnown RBP15.01□□□□□ -0.01
VPS35-210ENST00000568784 N4BP2L1Q5TBK1 243 aaPredicted RBP15.01□□□□□ -0.01
VPS35-210ENST00000568784 WDR49Q8IV35 697 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 TMEM192Q8IY95 271 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 DEFB107AQ8IZN7 70 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 STKLD1Q8NE28 680 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 KCNK13Q9HB14 408 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 RGS20O76081 388 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 GTF2A2P52657 109 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 SESTD1Q86VW0 696 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 SCUBE3Q8IX30 993 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 ARFGAP1Q8N6T3 406 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 FAM172AQ8WUF8 416 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 SKA1Q96BD8 255 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 TWNKQ96RR1 684 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 SORBS2O94875 1100 aaKnown RBP15.01□□□□□ -0.01
VPS35-210ENST00000568784 HSPA4LO95757 839 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 LYNP07948 512 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 TNFAIP1Q13829 316 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 TRMT5Q32P41 509 aaKnown RBP15.01□□□□□ -0.01
VPS35-210ENST00000568784 MPP5Q8N3R9 675 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 CENPKQ9BS16 269 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 TEX13BQ9BXU2 312 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 IRAK4Q9NWZ3 460 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 PLLPQ9Y342 182 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 SLC4A7Q9Y6M7 1214 aa15.01□□□□□ -0.01
VPS35-210ENST00000568784 CNTNAP1P78357 1384 aa15□□□□□ -0.01
VPS35-210ENST00000568784 A0A1B0GVG6 124 aa15□□□□□ -0.01
VPS35-210ENST00000568784 TRUB2O95900 331 aaKnown RBP15□□□□□ -0.01
VPS35-210ENST00000568784 ROR2Q01974 943 aaKnown RBP15□□□□□ -0.01
VPS35-210ENST00000568784 SLC25A11Q02978 314 aaKnown RBP15□□□□□ -0.01
VPS35-210ENST00000568784 ATF7IP2Q5U623 682 aa15□□□□□ -0.01
VPS35-210ENST00000568784 FAM160B1Q5W0V3 765 aa15□□□□□ -0.01
VPS35-210ENST00000568784 HEATR6Q6AI08 1181 aaKnown RBP15□□□□□ -0.01
VPS35-210ENST00000568784 CDKL2Q92772 493 aa15□□□□□ -0.01
VPS35-210ENST00000568784 PIWIL1Q96J94 861 aaKnown RBP15□□□□□ -0.01
VPS35-210ENST00000568784 PANX3Q96QZ0 392 aa15□□□□□ -0.01
VPS35-210ENST00000568784 MYOZ2Q9NPC6 264 aa15□□□□□ -0.01
VPS35-210ENST00000568784 WDR27A2RRH5 827 aa15□□□□□ -0.01
VPS35-210ENST00000568784 DCXO43602 365 aa15□□□□□ -0.01
VPS35-210ENST00000568784 NFICP08651 508 aa15□□□□□ -0.01
VPS35-210ENST00000568784 CXCL9Q07325 125 aa15□□□□□ -0.01
VPS35-210ENST00000568784 LY6KQ17RY6 165 aa15□□□□□ -0.01
VPS35-210ENST00000568784 ZNF518BQ9C0D4 1074 aa15□□□□□ -0.01
VPS35-210ENST00000568784 RNPEPQ9H4A4 650 aa15□□□□□ -0.01
VPS35-210ENST00000568784 KRT82Q9NSB4 513 aa15□□□□□ -0.01
VPS35-210ENST00000568784 KCNK4Q9NYG8 393 aa15□□□□□ -0.01
VPS35-210ENST00000568784 SYNPO2Q9UMS6 1093 aa15□□□□□ -0.01
VPS35-210ENST00000568784 PHKA2P46019 1235 aa15□□□□□ -0.01
VPS35-210ENST00000568784 CCNG1P51959 295 aa15□□□□□ -0.01
VPS35-210ENST00000568784 COPAP53621 1224 aa15□□□□□ -0.01
VPS35-210ENST00000568784 FKBP1AP62942 108 aaKnown RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms