RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 DEC1Q9P2X7 70 aa15.78■□□□□ 0.12
CLN3-236ENST00000568558 EVLQ9UI08 416 aaPredicted RBP15.78■□□□□ 0.12
CLN3-236ENST00000568558 MBD1Q9UIS9 605 aaPredicted RBP15.78■□□□□ 0.12
CLN3-236ENST00000568558 CIZ1Q9ULV3 898 aaPredicted RBP15.78■□□□□ 0.12
CLN3-236ENST00000568558 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 A0A1B0GVL5 298 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 TBC1D3BA6NDS4 549 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 CDX4O14627 284 aaPredicted RBP15.77■□□□□ 0.12
CLN3-236ENST00000568558 GREM1O60565 184 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 HLA-DRAP01903 254 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 MYL1P05976 194 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 FAM200BP0CF97 657 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 PFKFB1P16118 471 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 PIK3CAP42336 1068 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 IRX4P78413 519 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 INCA1Q0VD86 236 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 BYSLQ13895 437 aaKnown RBP15.77■□□□□ 0.12
CLN3-236ENST00000568558 ANO4Q32M45 955 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 C10orf76Q5T2E6 689 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 CLEC20AQ6ZU45 233 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 HTR3DQ70Z44 454 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 ARMCX6Q7L4S7 300 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 GPRIN1Q7Z2K8 1008 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 TRMT11Q7Z4G4 463 aaKnown RBP15.77■□□□□ 0.12
CLN3-236ENST00000568558 TMEFF1Q8IYR6 380 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 TWNKQ96RR1 684 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 KLF16Q9BXK1 252 aaPredicted RBP15.77■□□□□ 0.12
CLN3-236ENST00000568558 CYLDQ9NQC7 956 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 USP25Q9UHP3 1055 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 HCN2Q9UL51 889 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 TRAF3IP3Q9Y228 551 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 FRMD4BQ9Y2L6 1034 aa15.77■□□□□ 0.12
CLN3-236ENST00000568558 PCDH15Q96QU1 1955 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 HHLA1C9JL84 531 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 GIPC1O14908 333 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 TRIM24O15164 1050 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 MAPK13O15264 365 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 MAP3K13O43283 966 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 CALUO43852 315 aaPredicted RBP15.76■□□□□ 0.11
CLN3-236ENST00000568558 TBX18O95935 607 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 CMA1P23946 247 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 ADORA2BP29275 332 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 PTGER3P43115 390 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 TRIM61Q5EBN2 209 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 SPDYCQ5MJ68 293 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 NUDT18Q6ZVK8 323 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 PGBD3Q8N328 593 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 HNRNPABQ99729 332 aaKnown RBP15.76■□□□□ 0.11
CLN3-236ENST00000568558 OSER1Q9NX31 292 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 SCML2Q9UQR0 700 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 HPSEQ9Y251 543 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 STARD13Q9Y3M8 1113 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 FRYQ5TBA9 3013 aa15.76■□□□□ 0.11
CLN3-236ENST00000568558 CYP26A1O43174 497 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 CACNG3O60359 315 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 HOXB2P14652 356 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 GABRG2P18507 467 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 TRIM21P19474 475 aaKnown RBP15.75■□□□□ 0.11
CLN3-236ENST00000568558 CSRP1P21291 193 aaKnown RBP15.75■□□□□ 0.11
CLN3-236ENST00000568558 NTSR1P30989 418 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 ATP5C1P36542 298 aaKnown RBP15.75■□□□□ 0.11
CLN3-236ENST00000568558 VAMP7P51809 220 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 ZNF252P-AS1Q0IIN9 211 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 NFIL3Q16649 462 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 SH3PXD2AQ5TCZ1 1133 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 PEAR1Q5VY43 1037 aaPredicted RBP15.75■□□□□ 0.11
CLN3-236ENST00000568558 GRAMD4Q6IC98 578 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 MIB1Q86YT6 1006 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 SYT12Q8IV01 421 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 JAKMIP2Q96AA8 810 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 CYFIP2Q96F07 1278 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 NT5C1AQ9BXI3 368 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 IMPG2Q9BZV3 1241 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 APOBEC3GQ9HC16 384 aaKnown RBP15.75■□□□□ 0.11
CLN3-236ENST00000568558 PNPLA8Q9NP80 782 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.75■□□□□ 0.116e-9■■■■■ 134.6
CLN3-236ENST00000568558 TMEM74BQ9NUR3 256 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 DNAJC17Q9NVM6 304 aaKnown RBP15.75■□□□□ 0.11
CLN3-236ENST00000568558 MARK1Q9P0L2 795 aa15.75■□□□□ 0.11
CLN3-236ENST00000568558 LSM7Q9UK45 103 aaKnown RBP15.75■□□□□ 0.11
CLN3-236ENST00000568558 ATXN2Q99700 1313 aaKnown RBP15.74■□□□□ 0.11
CLN3-236ENST00000568558 NEDD8-MDP1E9PL57 170 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 TRIM49P0CI25 452 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 TRIM49CP0CI26 452 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 TYRP14679 529 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 ACO1P21399 889 aaKnown RBP15.74■□□□□ 0.11
CLN3-236ENST00000568558 NR2F2P24468 414 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 DPP6P42658 865 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 WASP42768 502 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 GOLGA8FQ08AF8 430 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 GOLGA8DPQ0D2H9 430 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 LMAN2Q12907 356 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 LYSMD4Q5XG99 296 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 EGFLAMQ63HQ2 1017 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 KLHDC10Q6PID8 442 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 TAS1R2Q8TE23 839 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 XPO6Q96QU8 1125 aaKnown RBP15.74■□□□□ 0.11
CLN3-236ENST00000568558 BBS2Q9BXC9 721 aa15.74■□□□□ 0.11
CLN3-236ENST00000568558 NUSAP1Q9BXS6 441 aaKnown RBP15.74■□□□□ 0.11
CLN3-236ENST00000568558 CYP3A43Q9HB55 503 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms