RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 ATG2BQ96BY7 2078 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 SLC9A3R1O14745 358 aaPredicted RBP14.13□□□□□ -0.15
CLK3-218ENST00000566926 ZDHHC11BP0C7U3 371 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 MBL2P11226 248 aaPredicted RBP14.13□□□□□ -0.15
CLK3-218ENST00000566926 CD72P21854 359 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 TARSP26639 723 aaKnown RBP14.13□□□□□ -0.15
CLK3-218ENST00000566926 PLA2G5P39877 138 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 RPS9P46781 194 aaKnown RBP14.13□□□□□ -0.15
CLK3-218ENST00000566926 BCAT1P54687 386 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 ADKP55263 362 aaKnown RBP14.13□□□□□ -0.15
CLK3-218ENST00000566926 NR1H3Q13133 447 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 MEA1Q16626 185 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 TADA2BQ86TJ2 420 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 CPA6Q8N4T0 437 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 UBR7Q8N806 425 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 TTC16Q8NEE8 873 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 OSCP1Q8WVF1 389 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 ATP2A3Q93084 1043 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 CLDN23Q96B33 292 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 SPAG5Q96R06 1193 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 IER2Q9BTL4 223 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 NACA2Q9H009 215 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 RNF38Q9H0F5 515 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 GANQ9H2C0 597 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 KCNF1Q9H3M0 494 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 DUS2Q9NX74 493 aaKnown RBP14.13□□□□□ -0.15
CLK3-218ENST00000566926 GTSE1Q9NYZ3 720 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 GMIPQ9P107 970 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 CPQQ9Y646 472 aa14.13□□□□□ -0.15
CLK3-218ENST00000566926 BZW2Q9Y6E2 419 aaKnown RBP14.13□□□□□ -0.15
CLK3-218ENST00000566926 HHLA1C9JL84 531 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 SPECC1L-ADORA2AF8WAN1 911 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 LEFTY2O00292 366 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 NFATC1O95644 943 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 CTHP32929 405 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 KLK7P49862 253 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 KIF11P52732 1056 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 MFAP3P55082 362 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 POLR2FP61218 127 aaKnown RBP14.12□□□□□ -0.15
CLK3-218ENST00000566926 CCZ1BP86790 482 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 CCZ1P86791 482 aaPredicted RBP14.12□□□□□ -0.15
CLK3-218ENST00000566926 BST2Q10589 180 aaKnown RBP14.12□□□□□ -0.15
CLK3-218ENST00000566926 TCF15Q12870 199 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 LRRC32Q14392 662 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 ARHGAP18Q8N392 663 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 CDK5RAP1Q96SZ6 601 aaKnown RBP14.12□□□□□ -0.15
CLK3-218ENST00000566926 STK33Q9BYT3 514 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 DLGAP2Q9P1A6 1054 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 TSPAN16Q9UKR8 245 aa14.12□□□□□ -0.15
CLK3-218ENST00000566926 NDRG2Q9UN36 371 aaKnown RBP14.12□□□□□ -0.15
CLK3-218ENST00000566926 XPO1O14980 1071 aaKnown RBP14.11□□□□□ -0.15
CLK3-218ENST00000566926 COCHO43405 550 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 TLR5O60602 858 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 SETSIPP0DME0 302 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 SLC9A1P19634 815 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 ATP5C1P36542 298 aaKnown RBP14.11□□□□□ -0.15
CLK3-218ENST00000566926 NHLH1Q02575 133 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 TNK2Q07912 1038 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 GOLGA8FQ08AF8 430 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 GOLGA8DPQ0D2H9 430 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 CNGA2Q16280 664 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 GOLGA7BQ2TAP0 167 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 DGKKQ5KSL6 1271 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 SFMBT2Q5VUG0 894 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 RRAGAQ7L523 313 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 ARHGEF19Q8IW93 802 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 FANCMQ8IYD8 2048 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 CCDC170Q8IYT3 715 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 RBBP8NLQ8NC74 664 aaPredicted RBP14.11□□□□□ -0.15
CLK3-218ENST00000566926 BAP1Q92560 729 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 ATOH1Q92858 354 aaPredicted RBP14.11□□□□□ -0.15
CLK3-218ENST00000566926 EBF3Q9H4W6 596 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 LRRC4Q9HBW1 653 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 SIX2Q9NPC8 291 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 UBE2TQ9NPD8 197 aaPredicted RBP14.11□□□□□ -0.15
CLK3-218ENST00000566926 HPS4Q9NQG7 708 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 AIPL1Q9NZN9 384 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 TBC1D14Q9P2M4 693 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 MTF2Q9Y483 593 aaPredicted RBP14.11□□□□□ -0.15
CLK3-218ENST00000566926 USP3Q9Y6I4 520 aa14.11□□□□□ -0.15
CLK3-218ENST00000566926 COL4A3Q01955 1670 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 E2F8A0AVK6 867 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 SHISA7A6NL88 538 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 LRRC53A6NM62 1247 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 ESPNB1AK53 854 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 H0Y858 1186 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 O00370 1275 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 EPHB6O15197 1021 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 LAMTOR5O43504 91 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 IPO7O95373 1038 aaKnown RBP14.1□□□□□ -0.15
CLK3-218ENST00000566926 RALAP11233 206 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 STAT1P42224 750 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 ANGPT1Q15389 498 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 RAB41Q5JT25 222 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 TRIM68Q6AZZ1 485 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 DPY19L2P1Q6NXN4 242 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 KLHDC10Q6PID8 442 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 LCLAT1Q6UWP7 414 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 GPRIN1Q7Z2K8 1008 aa14.1□□□□□ -0.15
CLK3-218ENST00000566926 PIGZQ86VD9 579 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms