RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 YWHAZP63104 245 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 ADAM17P78536 824 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 ZNF200P98182 395 aaPredicted RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 CDK16Q00536 496 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 PPARDQ03181 441 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SLC18A2Q05940 514 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 MAP2K5Q13163 448 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 MMRN1Q13201 1228 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 NAB1Q13506 487 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 MFSD10Q14728 455 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SETDB1Q15047 1291 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 TAF5Q15542 800 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 ZKSCAN8Q15776 578 aaPredicted RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 SEPT7Q16181 437 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 DBN1Q16643 649 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 KIZQ2M2Z5 673 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SOWAHAQ2M3V2 549 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 C15orf59Q2T9L4 293 aaPredicted RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 MSS51Q4VC12 460 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SLC45A4Q5BKX6 768 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 MORN1Q5T089 497 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 FYB2Q5VWT5 728 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SPRYD7Q5W111 196 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 NPNTQ6UXI9 565 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 C3orf62Q6ZUJ4 267 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 CYS1Q717R9 158 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 ACOT1Q86TX2 421 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SLC26A11Q86WA9 606 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 ANKMY2Q8IV38 441 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 TRIM42Q8IWZ5 723 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 BANPQ8N9N5 519 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 PCDH19Q8TAB3 1148 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 KBTBD7Q8WVZ9 684 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 KCTD13Q8WZ19 329 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 UPF1Q92900 1129 aaKnown RBP eCLIP6.5□□□□□ -1.37
CLN3-223ENST00000566472 MTBPQ96DY7 904 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 APOPT1Q96IL0 206 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 ZMAT2Q96NC0 199 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 TACO1Q9BSH4 297 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 EIF2AQ9BY44 585 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 TRIM6Q9C030 488 aaPredicted RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 SNX25Q9H3E2 840 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 NRDE2Q9H7Z3 1164 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 USP29Q9HBJ7 922 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 POPDC2Q9HBU9 364 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 XAB2Q9HCS7 855 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 NGRNQ9NPE2 291 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 EIF2B3Q9NR50 452 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 ABCF3Q9NUQ8 709 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SETD4Q9NVD3 440 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 ETNK2Q9NVF9 386 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.5□□□□□ -1.37
CLN3-223ENST00000566472 SAE1Q9UBE0 346 aaPredicted RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 TUBGCP4Q9UGJ1 667 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 CHMP2BQ9UQN3 213 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 GNEQ9Y223 722 aaKnown RBP6.5□□□□□ -1.37
CLN3-223ENST00000566472 IKBKGQ9Y6K9 419 aa6.5□□□□□ -1.37
CLN3-223ENST00000566472 SMIM28A0A1B0GU29 152 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 TCRBV7S3A2A0A539 114 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 TCRBV9S1A1TA0A576 114 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 KPNA7A9QM74 516 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 KBTBD13C9JR72 458 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 H3BRJ5 948 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 GOLGA8MH3BSY2 632 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 PPEF2O14830 753 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 KLF11O14901 512 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 PPP1R12AO14974 1030 aaPredicted RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 HUS1O60921 280 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 ATP2C2O75185 946 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 SPAG7O75391 227 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 KRT37O76014 449 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 STK10O94804 968 aaKnown RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 FBXO21O94952 628 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 TGDSO95455 350 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 MT-ND3P03897 115 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 RPLP2P05387 115 aaKnown RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 GNAT1P11488 350 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 KRT4P19013 534 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 PAX3P23760 479 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 CNTFP26441 200 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 RBL1P28749 1068 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 HOXC8P31273 242 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 L1CAMP32004 1257 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 RPA3P35244 121 aaPredicted RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 GNL1P36915 607 aaPredicted RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 ARL4AP40617 200 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 MATKP42679 507 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 MAGEA3P43357 314 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 PSMC4P43686 418 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 CPT1AP50416 773 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 SERPINB9P50453 376 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 NEK3P51956 506 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 ZNF135P52742 658 aaPredicted RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 CRYBB1P53674 252 aaPredicted RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 SLC8A3P57103 927 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 YWHAGP61981 247 aaKnown RBP eCLIP6.49□□□□□ -1.37
CLN3-223ENST00000566472 ELF3P78545 371 aaPredicted RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 SARNPP82979 210 aaKnown RBP6.49□□□□□ -1.37
CLN3-223ENST00000566472 ATP11AP98196 1134 aa6.49□□□□□ -1.37
CLN3-223ENST00000566472 CDK18Q07002 472 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms