RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 SFTPA1Q8IWL2 248 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 DCLK2Q8N568 766 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 NDRG1Q92597 394 aaKnown RBP19.34■□□□□ 0.69
CLN3-221ENST00000566057 EXOC4Q96A65 974 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 ZSWIM1Q9BR11 485 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 EPC1Q9H2F5 836 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 PCDHB4Q9Y5E5 795 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 CEP250Q9BV73 2442 aa19.34■□□□□ 0.69
CLN3-221ENST00000566057 O00370 1275 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 HRO43593 1189 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 ADH1CP00326 375 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 ADH5P11766 374 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 PSEN1P49768 467 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 TKTL1P51854 596 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 FBXO43Q4G163 708 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 PKDCCQ504Y2 493 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 C10orf120Q5SQS8 335 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 KLHDC10Q6PID8 442 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 ZNF276Q8N554 614 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 MLKLQ8NB16 471 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 RPLP0P6Q8NHW5 317 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 OTUB2Q96DC9 234 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 CNOT6LQ96LI5 555 aaKnown RBP19.33■□□□□ 0.68
CLN3-221ENST00000566057 KREMEN1Q96MU8 473 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 INTS2Q9H0H0 1204 aaKnown RBP19.33■□□□□ 0.68
CLN3-221ENST00000566057 LMBRD1Q9NUN5 540 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 DNMT3LQ9UJW3 386 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 KIAA1257Q9ULG3 409 aa19.33■□□□□ 0.68
CLN3-221ENST00000566057 XPO1O14980 1071 aaKnown RBP19.32■□□□□ 0.68
CLN3-221ENST00000566057 ATG13O75143 517 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 PAEPP09466 180 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 HOXA6P31267 233 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 BCAT1P54687 386 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 SLC8A3P57103 927 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 BST2Q10589 180 aaKnown RBP19.32■□□□□ 0.68
CLN3-221ENST00000566057 SRSF5Q13243 272 aaKnown RBP19.32■□□□□ 0.68
CLN3-221ENST00000566057 PM20D1Q6GTS8 502 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 LCLAT1Q6UWP7 414 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 BHLHA9Q7RTU4 235 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 TMEM25Q86YD3 366 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 CREBRFQ8IUR6 639 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 CLIC5Q9NZA1 410 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 HESX1Q9UBX0 185 aa19.32■□□□□ 0.68
CLN3-221ENST00000566057 SMG5Q9UPR3 1016 aaKnown RBP19.32■□□□□ 0.68
CLN3-221ENST00000566057 GABBR2O75899 941 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 RALAP11233 206 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 BRD2P25440 801 aaKnown RBP19.31■□□□□ 0.68
CLN3-221ENST00000566057 PLA2G4AP47712 749 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 PXNP49023 591 aaPredicted RBP19.31■□□□□ 0.68
CLN3-221ENST00000566057 SEC13P55735 322 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 GCNT1Q02742 428 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 LONP2Q86WA8 852 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 MIB1Q86YT6 1006 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 RBBP8NLQ8NC74 664 aaPredicted RBP19.31■□□□□ 0.68
CLN3-221ENST00000566057 RUBCNQ92622 972 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 PNKPQ96T60 521 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 CRACR2AQ9BSW2 395 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 ULBP1Q9BZM6 244 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 SPHK2Q9NRA0 654 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 SLC8A2Q9UPR5 921 aa19.31■□□□□ 0.68
CLN3-221ENST00000566057 ZBED1O96006 694 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 ZNF132P52740 706 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 YWHAGP61981 247 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLN3-221ENST00000566057 GAD2Q05329 585 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 CNGA2Q16280 664 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 LPAL2Q16609 132 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 DPCR1Q3MIW9 517 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 C2orf27AQ580R0 203 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 NAT16Q8N8M0 369 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 USP33Q8TEY7 942 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 HINFPQ9BQA5 517 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 NUP62CLQ9H1M0 184 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 UBE2TQ9NPD8 197 aaPredicted RBP19.3■□□□□ 0.68
CLN3-221ENST00000566057 DCHS1Q96JQ0 3298 aa19.3■□□□□ 0.68
CLN3-221ENST00000566057 A0A0A0MRY4 1105 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 HOXC11O43248 304 aaPredicted RBP19.29■□□□□ 0.68
CLN3-221ENST00000566057 STC2O76061 302 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 KAT7O95251 611 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 KLKB1P03952 638 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 CHRM1P11229 460 aaPredicted RBP19.29■□□□□ 0.68
CLN3-221ENST00000566057 EIF2DP41214 584 aaKnown RBP19.29■□□□□ 0.68
CLN3-221ENST00000566057 APBA1Q02410 837 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 KDSRQ06136 332 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 ADIGQ0VDE8 80 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 EFEMP1Q12805 493 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 ANO4Q32M45 955 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 Q6ZNB5 142 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 SYT13Q7L8C5 426 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 TADA2BQ86TJ2 420 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 WDR5BQ86VZ2 330 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 ETFBKMTQ8IXQ9 262 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 ARHGAP18Q8N392 663 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 PHTF2Q8N3S3 785 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 SLC35F5Q8WV83 523 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 KCTD13Q8WZ19 329 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 HHIPQ96QV1 700 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 LRRC4Q9HBW1 653 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 RASAL2Q9UJF2 1139 aa19.29■□□□□ 0.68
CLN3-221ENST00000566057 LSM7Q9UK45 103 aaKnown RBP19.29■□□□□ 0.68
CLN3-221ENST00000566057 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms