RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 HESX1Q9UBX0 185 aa21.82■■□□□ 1.08
CLN3-219ENST00000565778 LSM7Q9UK45 103 aaKnown RBP21.82■■□□□ 1.08
CLN3-219ENST00000565778 USP18Q9UMW8 372 aa21.82■■□□□ 1.08
CLN3-219ENST00000565778 ATG2BQ96BY7 2078 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.81■■□□□ 1.08
CLN3-219ENST00000565778 MDM4O15151 490 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 PMM2O15305 246 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 RPP40O75818 363 aaKnown RBP21.81■■□□□ 1.08
CLN3-219ENST00000565778 KAT7O95251 611 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 GNA14O95837 355 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 RETP07949 1114 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 CCDC192P0DO97 292 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 PAK1Q13153 545 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 FOXR2Q6PJQ5 311 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 PIGZQ86VD9 579 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 C12orf40Q86WS4 652 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 CCDC33Q8N5R6 958 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 NT5C1BQ96P26 610 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 KIAA1257Q9ULG3 409 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 FRYLO94915 3013 aa21.81■■□□□ 1.08
CLN3-219ENST00000565778 ANTXRLA6NF34 631 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 AXIN1O15169 862 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 APBB3O95704 486 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 VDRP11473 427 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 GRIA2P42262 883 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 MRPS21P82921 87 aaKnown RBP21.8■■□□□ 1.08
CLN3-219ENST00000565778 KDSRQ06136 332 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 SPEM2Q0P670 501 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 GOLGA7BQ2TAP0 167 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 PREPLQ4J6C6 727 aaPredicted RBP21.8■■□□□ 1.08
CLN3-219ENST00000565778 KLHDC10Q6PID8 442 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 TTC30AQ86WT1 665 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 MIB1Q86YT6 1006 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 PPM1KQ8N3J5 372 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 UBA3Q8TBC4 463 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 GAB3Q8WWW8 586 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 CDK5RAP1Q96SZ6 601 aaKnown RBP21.8■■□□□ 1.08
CLN3-219ENST00000565778 CLIC5Q9NZA1 410 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 KIAA1468Q9P260 1216 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 DEC1Q9P2X7 70 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 TSPAN16Q9UKR8 245 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 PCDHB4Q9Y5E5 795 aa21.8■■□□□ 1.08
CLN3-219ENST00000565778 A0A0A0MRY4 1105 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 TBC1D3BA6NDS4 549 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 P4HA2O15460 535 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 FGFR1OPO95684 399 aaKnown RBP21.79■■□□□ 1.08
CLN3-219ENST00000565778 TIE1P35590 1138 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 TNFRSF4P43489 277 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 TKTL1P51854 596 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 PDE4CQ08493 712 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 MESP2Q0VG99 397 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 KCNH2Q12809 1159 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 EMC10Q5UCC4 262 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 TMEM270Q6UE05 265 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 NUDT18Q6ZVK8 323 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 CACNA2D4Q7Z3S7 1137 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 CREBRFQ8IUR6 639 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 SFTPA1Q8IWL2 248 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 ARHGAP18Q8N392 663 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 ZNF276Q8N554 614 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 FAM160A2Q8N612 972 aaPredicted RBP21.79■■□□□ 1.08
CLN3-219ENST00000565778 TRIML1Q8N9V2 468 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 RMDN1Q96DB5 314 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 LRRC4Q9HBW1 653 aa21.79■■□□□ 1.08
CLN3-219ENST00000565778 HOXC11O43248 304 aaPredicted RBP21.78■■□□□ 1.08
CLN3-219ENST00000565778 GREM1O60565 184 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 ZBED1O96006 694 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 DGKEP52429 567 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 BCAT1P54687 386 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 YWHAGP61981 247 aaKnown RBP eCLIP21.78■■□□□ 1.08
CLN3-219ENST00000565778 COG7P83436 770 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 BST2Q10589 180 aaKnown RBP21.78■■□□□ 1.08
CLN3-219ENST00000565778 RAB41Q5JT25 222 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 TPGS1Q6ZTW0 290 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 RSRC2Q7L4I2 434 aaKnown RBP21.78■■□□□ 1.08
CLN3-219ENST00000565778 EHBP1Q8NDI1 1231 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 TSTD1Q8NFU3 115 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 WDR35Q9P2L0 1181 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 RASAL2Q9UJF2 1139 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 MMP17Q9ULZ9 603 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.78■■□□□ 1.08
CLN3-219ENST00000565778 GVINP1Q7Z2Y8 2422 aa21.78■■□□□ 1.08
CLN3-219ENST00000565778 OTOGLQ3ZCN5 2332 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 TULP2O00295 520 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 XPO1O14980 1071 aaKnown RBP21.77■■□□□ 1.08
CLN3-219ENST00000565778 TULP3O75386 442 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 HMBSP08397 361 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 TGM1P22735 817 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 EFEMP1Q12805 493 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 RRAGAQ7L523 313 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 TRIM59Q8IWR1 403 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 ETFBKMTQ8IXQ9 262 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 ALLCQ8N6M5 410 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 UBR7Q8N806 425 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 TXNDC5Q8NBS9 432 aaKnown RBP21.77■■□□□ 1.08
CLN3-219ENST00000565778 LMO3Q8TAP4 145 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 XPO6Q96QU8 1125 aaKnown RBP21.77■■□□□ 1.08
CLN3-219ENST00000565778 BBS2Q9BXC9 721 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 ULBP1Q9BZM6 244 aa21.77■■□□□ 1.08
CLN3-219ENST00000565778 PARD6AQ9NPB6 346 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms