RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CCDC33Q8N5R6 958 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 NAT16Q8N8M0 369 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 OTUB2Q96DC9 234 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 TMEM176AQ96HP8 235 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 NACA2Q9H009 215 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 ZDHHC4Q9NPG8 344 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 ARHGEF4Q9NR80 690 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 SPHK2Q9NRA0 654 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 SEMA4GQ9NTN9 838 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS39-208ENST00000564994 ARMCX3Q9UH62 379 aaPredicted RBP11.41□□□□□ -0.58
VPS39-208ENST00000564994 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.41□□□□□ -0.58
VPS39-208ENST00000564994 USP3Q9Y6I4 520 aa11.41□□□□□ -0.58
VPS39-208ENST00000564994 PPP1R3GB7ZBB8 358 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 TULP2O00295 520 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 PSMA7O14818 248 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 DCLK1O15075 740 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 TRIM24O15164 1050 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 HOXC11O43248 304 aaPredicted RBP11.4□□□□□ -0.58
VPS39-208ENST00000564994 LRP3O75074 770 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 TULP3O75386 442 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 CCDC192P0DO97 292 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 KIR2DL1P43626 348 aaPredicted RBP11.4□□□□□ -0.58
VPS39-208ENST00000564994 MRPS21P82921 87 aaKnown RBP11.4□□□□□ -0.58
VPS39-208ENST00000564994 FOXK2Q01167 660 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 LRMPQ12912 555 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 CSRP2Q16527 193 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 TTI2Q6NXR4 508 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 KLHDC10Q6PID8 442 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 TMEM92Q6UXU6 159 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 DGLUCYQ7Z3D6 616 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 CCDC186Q7Z3E2 898 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 CACNA2D4Q7Z3S7 1137 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 PIGZQ86VD9 579 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 TTC30AQ86WT1 665 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 TTC39CQ8N584 583 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 ALLCQ8N6M5 410 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 UBR7Q8N806 425 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 IL17RCQ8NAC3 791 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 P2RY11Q96G91 374 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 DHTKD1Q96HY7 919 aaPredicted RBP11.4□□□□□ -0.58
VPS39-208ENST00000564994 ZC3H10Q96K80 434 aaKnown RBP11.4□□□□□ -0.58
VPS39-208ENST00000564994 EBF1Q9UH73 591 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 HOOK1Q9UJC3 728 aaKnown RBP11.4□□□□□ -0.58
VPS39-208ENST00000564994 NAGPAQ9UK23 515 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 HCN2Q9UL51 889 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 MMP17Q9ULZ9 603 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 GON4LQ3T8J9 2241 aa11.4□□□□□ -0.58
VPS39-208ENST00000564994 CEP192Q8TEP8 1941 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 PLXND1Q9Y4D7 1925 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 MED19A0JLT2 244 aaPredicted RBP11.39□□□□□ -0.59
VPS39-208ENST00000564994 PRR5-ARHGAP8B1AHC4 643 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.39□□□□□ -0.59
VPS39-208ENST00000564994 SGK1O00141 431 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 GDF9O60383 454 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 ADAM23O75077 832 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 EPN2O95208 641 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 APODP05090 189 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 TIE1P35590 1138 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 GRIA2P42262 883 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 FMO5P49326 533 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 DGKEP52429 567 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 ATXN1P54253 815 aaKnown RBP11.39□□□□□ -0.59
VPS39-208ENST00000564994 ARHGAP8P85298 464 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 STIM1Q13586 685 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 MORC3Q14149 939 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 CCDC6Q16204 474 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 CRY1Q16526 586 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 ANO4Q32M45 955 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 PLK5Q496M5 336 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 RAB41Q5JT25 222 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 KLHL10Q6JEL2 608 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 PRR23CQ6ZRP0 262 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 BHLHA9Q7RTU4 235 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 RASSF3Q86WH2 238 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 ZNF276Q8N554 614 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 ANKRD52Q8NB46 1076 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 TXNDC5Q8NBS9 432 aaKnown RBP11.39□□□□□ -0.59
VPS39-208ENST00000564994 TSTD1Q8NFU3 115 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 CCDC26Q8TAB7 109 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 CEP63Q96MT8 703 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 GTPBP4Q9BZE4 634 aaKnown RBP11.39□□□□□ -0.59
VPS39-208ENST00000564994 TPSD1Q9BZJ3 242 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 UBXN6Q9BZV1 441 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 DNAI2Q9GZS0 605 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 DUSP15Q9H1R2 295 aaPredicted RBP11.39□□□□□ -0.59
VPS39-208ENST00000564994 ARRDC1-AS1Q9H2J1 176 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 FAM124BQ9H5Z6 455 aaPredicted RBP11.39□□□□□ -0.59
VPS39-208ENST00000564994 DNMT3LQ9UJW3 386 aa11.39□□□□□ -0.59
VPS39-208ENST00000564994 TNRC6BQ9UPQ9 1833 aaKnown RBP11.39□□□□□ -0.59
VPS39-208ENST00000564994 NEDD8-MDP1E9PL57 170 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 BIN1O00499 593 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 STC2O76061 302 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 KLF8O95600 359 aaPredicted RBP11.38□□□□□ -0.59
VPS39-208ENST00000564994 KLKB1P03952 638 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 TNFRSF4P43489 277 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 PLA2G4AP47712 749 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 PSEN1P49768 467 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 PDE4CQ08493 712 aa11.38□□□□□ -0.59
VPS39-208ENST00000564994 GOLGA7BQ2TAP0 167 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms