RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228		B2RBV5	119 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	ZBTB42	B2RXF5	422 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	FOXN3	O00409	490 aa	Predicted RBP	11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	SLC16A4	O15374	487 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	TGFB1I1	O43294	461 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	PEX1	O43933	1283 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	HMGCR	P04035	888 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	MYL3	P08590	195 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	DLD	P09622	509 aa	Known RBP	11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	C6orf222	P0C671	652 aa	Predicted RBP	11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	SMIM18	P0DKX4	95 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	CDK4	P11802	303 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	GTF2H1	P32780	548 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	PSMD7	P51665	324 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	PTP4A2	Q12974	167 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	MPP3	Q13368	585 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	ARHGEF6	Q15052	776 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	SEPT7	Q16181	437 aa	Known RBP	11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	CCNG2	Q16589	344 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	EFHC2	Q5JST6	749 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	C1orf228	Q6PIY5	440 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	UGT2A3	Q6UWM9	527 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	STXBP4	Q6ZWJ1	553 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	ZNF720	Q7Z2F6	126 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	ULK2	Q8IYT8	1036 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	PPP1R13L	Q8WUF5	828 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	GAB3	Q8WWW8	586 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	BSND	Q8WZ55	320 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	PWWP2A	Q96N64	755 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	KIFC3	Q9BVG8	833 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	KLHL4	Q9C0H6	718 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	RBM38	Q9H0Z9	239 aa	Known RBP	11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	USP29	Q9HBJ7	922 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	S100A14	Q9HCY8	104 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	CLIC5	Q9NZA1	410 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	THEG	Q9P2T0	379 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	PPM1H	Q9ULR3	514 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228		Q9Y3F1	56 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	TRIM17	Q9Y577	477 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	POC1B-GALNT4	F8VUJ3	575 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	SEPT4	O43236	478 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	DUSP11	O75319	330 aa	Known RBP	11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	PGK1	P00558	417 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	HOXD8	P13378	290 aa	Predicted RBP	11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	INSRR	P14616	1297 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	VCL	P18206	1134 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	ADRA1D	P25100	572 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	KLRC2	P26717	231 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	ADSS	P30520	456 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	PIK3CA	P42336	1068 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	ACADVL	P49748	655 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	EMP3	P54852	163 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	TBL3	Q12788	808 aa	Known RBP	11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	PDK3	Q15120	406 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	FSCN1	Q16658	493 aa	Known RBP	11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	ARHGAP44	Q17R89	818 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	P3H1	Q32P28	736 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	RAPH1	Q70E73	1250 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	ZBED8	Q8IZ13	594 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	LRRC71	Q8N4P6	559 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	JADE3	Q92613	823 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	SLC35B4	Q969S0	331 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	MTBP	Q96DY7	904 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	MAK16	Q9BXY0	300 aa	Known RBP	11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	IKZF4	Q9H2S9	585 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	SAYSD1	Q9NPB0	183 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	KMT5A	Q9NQR1	393 aa		11.5	□□□□□ -0.57
TCF4-222	ENST00000564228	FRMPD3	Q5JV73	1810 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	ARHGAP10	A1A4S6	786 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	MYADML2	A6NDP7	307 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	SPECC1L-ADORA2A	F8WAN1	911 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	CLIC2	O15247	247 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	P4HA2	O15460	535 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	LRRN2	O75325	713 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	MAF	O75444	373 aa	Predicted RBP	11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	E2F6	O75461	281 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	BAG2	O95816	211 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	DHRS4L1	P0CG22	281 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	NPTX2	P47972	431 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	RAB15	P59190	212 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	MSLN	Q13421	630 aa	Predicted RBP	11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	PRKD1	Q15139	912 aa	Predicted RBP	11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	TRIP13	Q15645	432 aa	Predicted RBP	11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	CBWD6	Q4V339	395 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	CBWD3	Q5JTY5	395 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	CBWD5	Q5RIA9	395 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	C1orf146	Q5VVC0	180 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	DUS1L	Q6P1R4	473 aa	Known RBP	11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	HAUS6	Q7Z4H7	955 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	CROCCP3	Q8IVE0	287 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	MARVELD2	Q8N4S9	558 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	LMO3	Q8TAP4	145 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	ATG4A	Q8WYN0	398 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	TTC1	Q99614	292 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	MRPS26	Q9BYN8	205 aa	Known RBP	11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	RNF39	Q9H2S5	420 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	FBXO6	Q9NRD1	293 aa	Predicted RBP	11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	FAIM	Q9NVQ4	179 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	DMAC2	Q9NW81	257 aa		11.49	□□□□□ -0.57
TCF4-222	ENST00000564228	KCNK4	Q9NYG8	393 aa		11.49	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms