RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ZPBP2Q6X784 338 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 TRIM50Q86XT4 487 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 ULK2Q8IYT8 1036 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 NDUFAF2Q8N183 169 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 ARHGAP24Q8N264 748 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 FNIP1Q8TF40 1166 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 MMP19Q99542 508 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 USP29Q9HBJ7 922 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 POPDC2Q9HBU9 364 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 ZNF212Q9UDV6 495 aa13.72□□□□□ -0.21
CLN3-210ENST00000563874 CPSF3Q9UKF6 684 aaKnown RBP13.72□□□□□ -0.21
CLN3-210ENST00000563874 SMAPO00193 183 aa13.71□□□□□ -0.21
CLN3-210ENST00000563874 MICAL2O94851 1124 aa13.71□□□□□ -0.21
CLN3-210ENST00000563874 TNNC2P02585 160 aa13.71□□□□□ -0.21
CLN3-210ENST00000563874 HMGCRP04035 888 aa13.71□□□□□ -0.21
CLN3-210ENST00000563874 CXCL8P10145 99 aa13.71□□□□□ -0.21
CLN3-210ENST00000563874 AP3M2P53677 418 aa13.71□□□□□ -0.21
CLN3-210ENST00000563874 LRRC36Q1X8D7 754 aa13.71□□□□□ -0.21
CLN3-210ENST00000563874 CAND1Q86VP6 1230 aaKnown RBP13.71□□□□□ -0.21
CLN3-210ENST00000563874 MPP5Q8N3R9 675 aa13.71□□□□□ -0.21
CLN3-210ENST00000563874 ACAD9Q9H845 621 aa13.71□□□□□ -0.21
CLN3-210ENST00000563874 SPECC1L-ADORA2AF8WAN1 911 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 CSDE1O75534 798 aaKnown RBP13.71□□□□□ -0.22
CLN3-210ENST00000563874 ANPEPP15144 967 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 OSBPP22059 807 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 CALRP27797 417 aaKnown RBP13.71□□□□□ -0.22
CLN3-210ENST00000563874 KRT81Q14533 505 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 ZRSR2Q15696 482 aaKnown RBP13.71□□□□□ -0.22
CLN3-210ENST00000563874 STXBP2Q15833 593 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 NIM1KQ8IY84 436 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 SLC4A11Q8NBS3 891 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 MTMR14Q8NCE2 650 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 ZBED3Q96IU2 234 aaPredicted RBP13.71□□□□□ -0.22
CLN3-210ENST00000563874 SHCBP1LQ9BZQ2 653 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 LHX5Q9H2C1 402 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 SLC17A6Q9P2U8 582 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 PPM1HQ9ULR3 514 aa13.71□□□□□ -0.22
CLN3-210ENST00000563874 A8MXQ7 604 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 KLF11O14901 512 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 MED7O43513 233 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 LYPLA1O75608 230 aaPredicted RBP13.7□□□□□ -0.22
CLN3-210ENST00000563874 PDGFRAP16234 1089 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 TSHRP16473 764 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 UBA1P22314 1058 aaKnown RBP13.7□□□□□ -0.22
CLN3-210ENST00000563874 STAT5BP51692 787 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 RAP1GDS1P52306 607 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 INHBEP58166 350 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 C11orf91Q3C1V1 193 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 ZNF667Q5HYK9 610 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 EEF1DP3Q658K8 133 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 ATG16L1Q676U5 607 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 CYP4V2Q6ZWL3 525 aaPredicted RBP13.7□□□□□ -0.22
CLN3-210ENST00000563874 UNC5BQ8IZJ1 945 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 POU5F2Q8N7G0 328 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 AGBL3Q8NEM8 1001 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 RXFP2Q8WXD0 754 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 NLRP4Q96MN2 994 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 C7orf26Q96N11 449 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 APOL6Q9BWW8 343 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 TEX13BQ9BXU2 312 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 NIFKQ9BYG3 293 aaKnown RBP13.7□□□□□ -0.22
CLN3-210ENST00000563874 ELOVL4Q9GZR5 314 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 ASNSD1Q9NWL6 643 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 AFG3L2Q9Y4W6 797 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 NR2E3Q9Y5X4 410 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 INO80B-WBP1J3KQ70 363 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 CHADO15335 359 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 CIB2O75838 187 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 ZBED1O96006 694 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 GRIA1P42261 906 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 PTPN11Q06124 597 aaPredicted RBP13.7□□□□□ -0.22
CLN3-210ENST00000563874 LAMTOR4Q0VGL1 99 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 TEX44Q53QW1 395 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 ANGEL2Q5VTE6 544 aaKnown RBP13.7□□□□□ -0.22
CLN3-210ENST00000563874 OR6B2Q6IFH4 312 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 C16orf46Q6P387 395 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 UNC5AQ6ZN44 842 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 CRLF3Q8IUI8 442 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 PLD5Q8N7P1 536 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 GSTCDQ8NEC7 633 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 GATA6Q92908 595 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 ANKRD36BP1Q96IX9 119 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 INO80BQ9C086 356 aaPredicted RBP13.7□□□□□ -0.22
CLN3-210ENST00000563874 WWP1Q9H0M0 922 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 NGRNQ9NPE2 291 aaKnown RBP13.7□□□□□ -0.22
CLN3-210ENST00000563874 TAGLN3Q9UI15 199 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 PLA2G4CQ9UP65 541 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 HMX2A2RU54 273 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 MAGEC1O60732 1142 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 TM7SF2O76062 418 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 NFICP08651 508 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 SLC25A3Q00325 362 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 TARBP2Q15633 366 aaKnown RBP13.7□□□□□ -0.22
CLN3-210ENST00000563874 AP1ARQ63HQ0 302 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 SAMD7Q7Z3H4 446 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 PPP1R14CQ8TAE6 165 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 TRAPPC12Q8WVT3 735 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 MTBPQ96DY7 904 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 IFT43Q96FT9 208 aa13.7□□□□□ -0.22
CLN3-210ENST00000563874 HEXIM2Q96MH2 286 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms