RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 APBA1Q02410 837 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 DMC1Q14565 340 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 SGO2Q562F6 1265 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 HSP90AA4PQ58FG1 418 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 ARHGAP17Q68EM7 881 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 GJB7Q6PEY0 223 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 LONP2Q86WA8 852 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 UBR7Q8N806 425 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 ANKRD52Q8NB46 1076 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 EHBP1Q8NDI1 1231 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 LMO3Q8TAP4 145 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 MED15Q96RN5 788 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 ZSWIM1Q9BR11 485 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 FAM126AQ9BYI3 521 aaPredicted RBP13.17□□□□□ -0.3
SMAD3-208ENST00000558827 EPC1Q9H2F5 836 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 ARHGEF4Q9NR80 690 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.17□□□□□ -0.3
SMAD3-208ENST00000558827 PLK2Q9NYY3 685 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 TBC1D14Q9P2M4 693 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 RAB23Q9ULC3 237 aa13.17□□□□□ -0.3
SMAD3-208ENST00000558827 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.17□□□□□ -0.3
SMAD3-208ENST00000558827 DCLK1O15075 740 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 ATG13O75143 517 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 KAT7O95251 611 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 ADH1CP00326 375 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 AFPP02771 609 aaKnown RBP13.16□□□□□ -0.3
SMAD3-208ENST00000558827 RALAP11233 206 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 PPP1R2P41236 205 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 WASP42768 502 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 TUBP50607 506 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 SPEM2Q0P670 501 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 CCDC6Q16204 474 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 RSRC2Q7L4I2 434 aaKnown RBP13.16□□□□□ -0.3
SMAD3-208ENST00000558827 TRIM59Q8IWR1 403 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 TTC39CQ8N584 583 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 USP33Q8TEY7 942 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 EDEM1Q92611 657 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 EXOC4Q96A65 974 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 PNKPQ96T60 521 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 TPSD1Q9BZJ3 242 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 INTS2Q9H0H0 1204 aaKnown RBP13.16□□□□□ -0.3
SMAD3-208ENST00000558827 LRRC4Q9HBW1 653 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 PARD6AQ9NPB6 346 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 CYLDQ9NQC7 956 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 HESX1Q9UBX0 185 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 DNMT3LQ9UJW3 386 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 USP18Q9UMW8 372 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 USP3Q9Y6I4 520 aa13.16□□□□□ -0.3
SMAD3-208ENST00000558827 SLC12A8A0AV02 714 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 TBC1D3BA6NDS4 549 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 NEDD8-MDP1E9PL57 170 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 O00370 1275 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 AXIN1O15169 862 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 GREM1O60565 184 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 TULP3O75386 442 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 KLF8O95600 359 aaPredicted RBP13.15□□□□□ -0.3
SMAD3-208ENST00000558827 APODP05090 189 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 VDRP11473 427 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 KRT5P13647 590 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 HNRNPLP14866 589 aaKnown RBP eCLIP13.15□□□□□ -0.3
SMAD3-208ENST00000558827 TBXAS1P24557 533 aaPredicted RBP13.15□□□□□ -0.3
SMAD3-208ENST00000558827 DGKEP52429 567 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 YWHAGP61981 247 aaKnown RBP eCLIP13.15□□□□□ -0.3
SMAD3-208ENST00000558827 YWHAEP62258 255 aaKnown RBP13.15□□□□□ -0.3
SMAD3-208ENST00000558827 GAD2Q05329 585 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 ADIGQ0VDE8 80 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 BTBD8Q5XKL5 378 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 CCDC186Q7Z3E2 898 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 WDR5BQ86VZ2 330 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 ALLCQ8N6M5 410 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 RBBP8NLQ8NC74 664 aaPredicted RBP13.15□□□□□ -0.3
SMAD3-208ENST00000558827 P2RY11Q96G91 374 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 CNOT6LQ96LI5 555 aaKnown RBP13.15□□□□□ -0.3
SMAD3-208ENST00000558827 KREMEN1Q96MU8 473 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 CLSTN2Q9H4D0 955 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 UBE2TQ9NPD8 197 aaPredicted RBP13.15□□□□□ -0.3
SMAD3-208ENST00000558827 ACP6Q9NPH0 428 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 SPHK2Q9NRA0 654 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 LSM7Q9UK45 103 aaKnown RBP13.15□□□□□ -0.3
SMAD3-208ENST00000558827 GMEB2Q9UKD1 530 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 RALGAPA1Q6GYQ0 2036 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 ABCA7Q8IZY2 2146 aa13.15□□□□□ -0.3
SMAD3-208ENST00000558827 FAM170AA1A519 330 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 M0QYV0 167 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 GABBR2O75899 941 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 STC2O76061 302 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 PAPSS2O95340 614 aaPredicted RBP13.14□□□□□ -0.31
SMAD3-208ENST00000558827 ZBED1O96006 694 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 KLKB1P03952 638 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 CCDC192P0DO97 292 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 SLC9A1P19634 815 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 USP8P40818 1118 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 PLA2G4AP47712 749 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 BCAT1P54687 386 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 SLC8A3P57103 927 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 BST2Q10589 180 aaKnown RBP13.14□□□□□ -0.31
SMAD3-208ENST00000558827 CETN1Q12798 172 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 TPD52L1Q16890 204 aaPredicted RBP13.14□□□□□ -0.31
SMAD3-208ENST00000558827 ARHGAP44Q17R89 818 aa13.14□□□□□ -0.31
SMAD3-208ENST00000558827 FBXO43Q4G163 708 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms