RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SLC10A2Q12908 348 aaPredicted RBP13.4□□□□□ -0.26
LDLR-207ENST00000558013 PRKD1Q15139 912 aaPredicted RBP13.4□□□□□ -0.26
LDLR-207ENST00000558013 GOLGA7BQ2TAP0 167 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 RINLQ6ZS11 566 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 PLPPR4Q7Z2D5 763 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 APBB1IPQ7Z5R6 666 aaPredicted RBP13.4□□□□□ -0.26
LDLR-207ENST00000558013 ARMC2Q8NEN0 867 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 ACAP3Q96P50 834 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 MAD1L1Q9Y6D9 718 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 CSH1P0DML2 217 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 CSH2P0DML3 217 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 CALB2P22676 271 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 PTPN4P29074 926 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 SERPINB4P48594 390 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 MRPS5P82675 430 aaKnown RBP13.4□□□□□ -0.26
LDLR-207ENST00000558013 ZBTB16Q05516 673 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 MROH9Q5TGP6 573 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 ZCCHC23Q6ZST2 131 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 INPP5DQ92835 1189 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 APOPT1Q96IL0 206 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 SNRNP25Q9BV90 132 aaKnown RBP13.4□□□□□ -0.26
LDLR-207ENST00000558013 PCDH18Q9HCL0 1135 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 SSU72Q9NP77 194 aaKnown RBP13.4□□□□□ -0.26
LDLR-207ENST00000558013 PAPPA2Q9BXP8 1791 aa13.4□□□□□ -0.26
LDLR-207ENST00000558013 MYO18AQ92614 2054 aaKnown RBP13.39□□□□□ -0.27
LDLR-207ENST00000558013 F7P08709 466 aaPredicted RBP13.39□□□□□ -0.27
LDLR-207ENST00000558013 STIP1P31948 543 aaKnown RBP13.39□□□□□ -0.27
LDLR-207ENST00000558013 PCK1P35558 622 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 TAF11Q15544 211 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 GLRA4Q5JXX5 417 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 STK32AQ8WU08 396 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 CEP41Q9BYV8 373 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 NMUR2Q9GZQ4 415 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 POPDC2Q9HBU9 364 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 DPP3Q9NY33 737 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 BARX2Q9UMQ3 279 aaPredicted RBP13.39□□□□□ -0.27
LDLR-207ENST00000558013 IQANK1A0A1B0GTG1 560 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 HMX2A2RU54 273 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 IL18RAPO95256 599 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 VDRP11473 427 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 PHKA2P46019 1235 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 TMEM132DQ14C87 1099 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 C7orf31Q8N865 590 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 NLGN2Q8NFZ4 835 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 NDRG1Q92597 394 aaKnown RBP13.39□□□□□ -0.27
LDLR-207ENST00000558013 PTCD3Q96EY7 689 aaKnown RBP13.39□□□□□ -0.27
LDLR-207ENST00000558013 DPEP3Q9H4B8 488 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 IL1RAPL1Q9NZN1 696 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 CNTN3Q9P232 1028 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 FETUBQ9UGM5 382 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 SNX9Q9Y5X1 595 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 ATP5HO75947 161 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 HAUS5O94927 633 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 ZBED1O96006 694 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 PTDSS1P48651 473 aaKnown RBP13.39□□□□□ -0.27
LDLR-207ENST00000558013 SLC18A2Q05940 514 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 RPAINQ86UA6 219 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 WDR60Q8WVS4 1066 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 SMARCAD1Q9H4L7 1026 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 PPCSQ9HAB8 311 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 GBA2Q9HCG7 927 aaPredicted RBP13.39□□□□□ -0.27
LDLR-207ENST00000558013 TMPRSS4Q9NRS4 437 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 ETNK2Q9NVF9 386 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 TRIP11Q15643 1979 aa13.39□□□□□ -0.27
LDLR-207ENST00000558013 SLC15A5A6NIM6 579 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 COPEO14579 308 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 PAPSS1O43252 624 aaPredicted RBP13.38□□□□□ -0.27
LDLR-207ENST00000558013 DDNO94850 711 aaPredicted RBP13.38□□□□□ -0.27
LDLR-207ENST00000558013 ADORA2AP29274 412 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 HDAC4P56524 1084 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 OLFML1Q6UWY5 402 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 UNC5AQ6ZN44 842 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 SLC26A11Q86WA9 606 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 PYROXD2Q8N2H3 581 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 DTX3LQ8TDB6 740 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 KIF12Q96FN5 646 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 ZMAT2Q96NC0 199 aaKnown RBP13.38□□□□□ -0.27
LDLR-207ENST00000558013 TAS2R1Q9NYW7 299 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 CSADQ9Y600 493 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 SCN1AP35498 2009 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 HBP1O60381 514 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 RFPL1O75677 317 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 BST1Q10588 318 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 KPNB1Q14974 876 aaKnown RBP13.38□□□□□ -0.27
LDLR-207ENST00000558013 LCLAT1Q6UWP7 414 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 C4orf50Q6ZRC1 276 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 SLC16A10Q8TF71 515 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 NLRP7Q8WX94 980 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 C18orf25Q96B23 403 aaPredicted RBP13.38□□□□□ -0.27
LDLR-207ENST00000558013 SKA1Q96BD8 255 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 MMP19Q99542 508 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 PCMTD2Q9NV79 361 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 GJD2Q9UKL4 321 aa13.38□□□□□ -0.27
LDLR-207ENST00000558013 E2F8A0AVK6 867 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 TRAFD1O14545 582 aaPredicted RBP13.37□□□□□ -0.27
LDLR-207ENST00000558013 APOL1O14791 398 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 PDGFRBP09619 1106 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 BAG6P46379 1132 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 KCTD2Q14681 263 aa13.37□□□□□ -0.27
LDLR-207ENST00000558013 ZNF534Q76KX8 674 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms