RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 CPSF3Q9UKF6 684 aaKnown RBP16.92■□□□□ 0.3
SHMT2-232ENST00000557487 KIAA1217Q5T5P2 1943 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 IGKV6D-21A0A0A0MT36 114 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 KLHL33A6NCF5 533 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 APOEP02649 317 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 CD19P15391 556 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 AMPD1P23109 780 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 RAB27AP51159 221 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 CAPSQ13938 189 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 TARBP2Q15633 366 aaKnown RBP16.91■□□□□ 0.3
SHMT2-232ENST00000557487 ZNF394Q53GI3 561 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 RIPOR1Q6ZS17 1223 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 CYS1Q717R9 158 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 ARID3BQ8IVW6 561 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-232ENST00000557487 CTAGE3PQ8IX95 158 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 REPS2Q8NFH8 660 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 USP6NLQ92738 828 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 ATG4CQ96DT6 458 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 ANKRD36BP1Q96IX9 119 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 ACAP3Q96P50 834 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 CNPY3Q9BT09 278 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 CALN1Q9BXU9 219 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 SDCBP2Q9H190 292 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 XYLT2Q9H1B5 865 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 POPDC2Q9HBU9 364 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 THAP1Q9NVV9 213 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 ZDHHC7Q9NXF8 308 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 ARMCX1Q9P291 453 aa16.91■□□□□ 0.3
SHMT2-232ENST00000557487 HBS1LQ9Y450 684 aaKnown RBP16.91■□□□□ 0.3
SHMT2-232ENST00000557487 BCLAF3A2AJT9 711 aaKnown RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 GAS2O43903 313 aaKnown RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 B4GALT4O60513 344 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 RFPL1O75677 317 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 KLHL2O95198 593 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 BPGMP07738 259 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 CD48P09326 243 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 ZNF143P52747 638 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 SP4Q02446 784 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 TNFAIP1Q13829 316 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 HNRNPDQ14103 355 aaKnown RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 CHI3L2Q15782 390 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 RNF220Q5VTB9 566 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 PRPF39Q86UA1 669 aaKnown RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 TREML1Q86YW5 311 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 EXOC8Q8IYI6 725 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 ECSITQ9BQ95 431 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 BCO2Q9BYV7 579 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 PPP1R12CQ9BZL4 782 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 FAM124BQ9H5Z6 455 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 RAB6BQ9NRW1 208 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 ETAA1Q9NY74 926 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 SOX13Q9UN79 622 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 SSX2IPQ9Y2D8 614 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 RIPK3Q9Y572 518 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 SLC4A7Q9Y6M7 1214 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 ZNF487B1APH4 448 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 E5RJQ4 531 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 H7C0C1 242 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 MSCO60682 206 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 PIAS1O75925 651 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 LYNP07948 512 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 HARSP12081 509 aaKnown RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 MYL4P12829 197 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 ATP5OP48047 213 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 HIRAP54198 1017 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 MRPS5P82675 430 aaKnown RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 MTMR2Q13614 643 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 SNRNP48Q6IEG0 339 aaKnown RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 CDHR3Q6ZTQ4 885 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 WDR75Q8IWA0 830 aaKnown RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 ACMSDQ8TDX5 336 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 ZC3H15Q8WU90 426 aaKnown RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 HSPH1Q92598 858 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 JADE3Q92613 823 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 CFAP36Q96G28 342 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 OLFM3Q96PB7 478 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 ACO2Q99798 780 aaKnown RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 TCHPQ9BT92 498 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 GCOM2Q9BZD3 368 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-232ENST00000557487 USP29Q9HBJ7 922 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 PCSK1NQ9UHG2 260 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 ADAMTS5Q9UNA0 930 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 WASF2Q9Y6W5 498 aa16.9■□□□□ 0.3
SHMT2-232ENST00000557487 EDN1P05305 212 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 TNFSF9P41273 254 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 AQP5P55064 265 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 IRX4P78413 519 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 STX3Q13277 289 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 C1orf146Q5VVC0 180 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 ZBTB8OSQ8IWT0 167 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 RNF157Q96PX1 679 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 PANX3Q96QZ0 392 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 CPXM1Q96SM3 734 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 C2orf40Q9H1Z8 148 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 ACAD9Q9H845 621 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 SLC7A8Q9UHI5 535 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 CYTH4Q9UIA0 394 aa16.89■□□□□ 0.29
SHMT2-232ENST00000557487 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.89■□□□□ 0.29
SHMT2-232ENST00000557487 SDR42E2A6NKP2 422 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms