RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 OLFM3Q96PB7 478 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 ACO2Q99798 780 aaKnown RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 TCHPQ9BT92 498 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 GCOM2Q9BZD3 368 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 USP29Q9HBJ7 922 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 PCSK1NQ9UHG2 260 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 ADAMTS5Q9UNA0 930 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 WASF2Q9Y6W5 498 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 EDN1P05305 212 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 TNFSF9P41273 254 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 AQP5P55064 265 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 IRX4P78413 519 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 STX3Q13277 289 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 C1orf146Q5VVC0 180 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 ZBTB8OSQ8IWT0 167 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 RNF157Q96PX1 679 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 PANX3Q96QZ0 392 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 CPXM1Q96SM3 734 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 C2orf40Q9H1Z8 148 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 ACAD9Q9H845 621 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 SLC7A8Q9UHI5 535 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 CYTH4Q9UIA0 394 aa16.89■□□□□ 0.29
SHMT2-231ENST00000557433 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.89■□□□□ 0.29
SHMT2-231ENST00000557433 SDR42E2A6NKP2 422 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 FAM159BA6NKW6 160 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 MAFO75444 373 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-231ENST00000557433 RTN3O95197 1032 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-231ENST00000557433 IL18RAPO95256 599 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 HMGCRP04035 888 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 ERBB2P04626 1255 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 HOXC6P09630 235 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 PIM1P11309 404 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-231ENST00000557433 GPD1P21695 349 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 PSMC4P43686 418 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 CDH6P55285 790 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 STXBP2Q15833 593 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 HSF5Q4G112 596 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-231ENST00000557433 BOLA3Q53S33 107 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 ZNF667Q5HYK9 610 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 IER5Q5VY09 327 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 FAM160B1Q5W0V3 765 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 IZUMO2Q6UXV1 221 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 KBTBD2Q8IY47 623 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 GSDMBQ8TAX9 411 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 PIP4K2CQ8TBX8 421 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 DTNBP1Q96EV8 351 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 ADPGKQ9BRR6 497 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 CENPKQ9BS16 269 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 THTPAQ9BU02 230 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 AS3MTQ9HBK9 375 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 PARP14Q460N5 1801 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 C2orf71A6NGG8 1288 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 TPSB2P20231 275 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 MAGEA3P43357 314 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 TFAMQ00059 246 aaKnown RBP16.88■□□□□ 0.29
SHMT2-231ENST00000557433 HIC1Q14526 733 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 MXD4Q14582 209 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-231ENST00000557433 TPSAB1Q15661 275 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 ACAD11Q709F0 780 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 TAB3Q8N5C8 712 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-231ENST00000557433 EMC1Q8N766 993 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 DNERQ8NFT8 737 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 FAM167AQ96KS9 214 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 RILPQ96NA2 401 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 TBCBQ99426 244 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 CYP3A43Q9HB55 503 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 VCX3AQ9NNX9 186 aa16.88■□□□□ 0.29
SHMT2-231ENST00000557433 DMAP1Q9NPF5 467 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-231ENST00000557433 WNT10BO00744 389 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 APOL1O14791 398 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 PRPSAP2O60256 369 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 UPP2O95045 317 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 ZBED1O96006 694 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 CPA2P48052 419 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 PTPN11Q06124 597 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-231ENST00000557433 PDCD2Q16342 344 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-231ENST00000557433 SEZ6Q53EL9 994 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 SCARA5Q6ZMJ2 495 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 CDKL3Q8IVW4 592 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-231ENST00000557433 ST13P4Q8IZP2 240 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-231ENST00000557433 STKLD1Q8NE28 680 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 NCSTNQ92542 709 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 C12orf42Q96LP6 360 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 TEX13BQ9BXU2 312 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 XAB2Q9HCS7 855 aaKnown RBP16.87■□□□□ 0.29
SHMT2-231ENST00000557433 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.87■□□□□ 0.29
SHMT2-231ENST00000557433 ETNK2Q9NVF9 386 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 ITGA11Q9UKX5 1188 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 ZNF214Q9UL59 606 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-231ENST00000557433 TELO2Q9Y4R8 837 aa16.87■□□□□ 0.29
SHMT2-231ENST00000557433 SLC15A5A6NIM6 579 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 KCNN4O15554 427 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 CCNT2O60583 730 aaKnown RBP16.86■□□□□ 0.29
SHMT2-231ENST00000557433 DESP17661 470 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 CDK7P50613 346 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 BACE1P56817 501 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 KDSRQ06136 332 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 NAB1Q13506 487 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 EFHC1Q5JVL4 640 aa16.86■□□□□ 0.29
SHMT2-231ENST00000557433 ZBTB33Q86T24 672 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms