RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 IRGQQ8WZA9 623 aa18.34■□□□□ 0.53
SHMT2-225ENST00000556798 E2F7Q96AV8 911 aa18.34■□□□□ 0.53
SHMT2-225ENST00000556798 PIWIL1Q96J94 861 aaKnown RBP18.34■□□□□ 0.53
SHMT2-225ENST00000556798 ZFRQ96KR1 1074 aaKnown RBP18.34■□□□□ 0.53
SHMT2-225ENST00000556798 PCDHB18PQ96TA0 734 aa18.34■□□□□ 0.53
SHMT2-225ENST00000556798 AGPAT1Q99943 283 aa18.34■□□□□ 0.53
SHMT2-225ENST00000556798 TRMT61BQ9BVS5 477 aaKnown RBP18.34■□□□□ 0.53
SHMT2-225ENST00000556798 SYNCQ9H7C4 482 aa18.34■□□□□ 0.53
SHMT2-225ENST00000556798 KIF9Q9HAQ2 790 aa18.34■□□□□ 0.53
SHMT2-225ENST00000556798 OBP2AQ9NY56 170 aa18.34■□□□□ 0.53
SHMT2-225ENST00000556798 CLIC5Q9NZA1 410 aa18.34■□□□□ 0.53
SHMT2-225ENST00000556798 CAPN11Q9UMQ6 739 aa18.34■□□□□ 0.53
SHMT2-225ENST00000556798 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.34■□□□□ 0.53
SHMT2-225ENST00000556798 LEFTY2O00292 366 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 LSM8O95777 96 aaKnown RBP18.33■□□□□ 0.52
SHMT2-225ENST00000556798 CCDC172P0C7W6 258 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 IRF1P10914 325 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 SRFP11831 508 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 SKILP12757 684 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 ATP5C1P36542 298 aaKnown RBP18.33■□□□□ 0.52
SHMT2-225ENST00000556798 EFEMP1Q12805 493 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 MTF1Q14872 753 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 C2CD6Q53TS8 623 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 BSPRYQ5W0U4 402 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 FAM183BPQ6ZVS7 135 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 RSRC2Q7L4I2 434 aaKnown RBP18.33■□□□□ 0.52
SHMT2-225ENST00000556798 YAF2Q8IY57 180 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 IPO4Q8TEX9 1081 aaKnown RBP18.33■□□□□ 0.52
SHMT2-225ENST00000556798 FAM149B1Q96BN6 582 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 BRD9Q9H8M2 597 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 GKN1Q9NS71 199 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 AIPL1Q9NZN9 384 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 RASAL2Q9UJF2 1139 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 MIA3Q5JRA6 1907 aa18.33■□□□□ 0.52
SHMT2-225ENST00000556798 DLL1O00548 723 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 LTFP02788 710 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 CYP1A1P04798 512 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-225ENST00000556798 ZBED6P86452 979 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 GOLGA8FQ08AF8 430 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 GOLGA8DPQ0D2H9 430 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 FCHO2Q0JRZ9 810 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 IER5LQ5T953 404 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 OR6B2Q6IFH4 312 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 TRIM72Q6ZMU5 477 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 ERICH1Q86X53 443 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 MIB1Q86YT6 1006 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 FMNL3Q8IVF7 1028 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 UBALD2Q8IYN6 164 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 ZNF397Q8NF99 534 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-225ENST00000556798 SLC30A5Q8TAD4 765 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 OLIG1Q8TAK6 271 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 GOLGA1Q92805 767 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 WBP2Q969T9 261 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 IQCDQ96DY2 449 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 ASIC4Q96FT7 647 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 EPHX3Q9H6B9 360 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 HAUS4Q9H6D7 363 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 CFAP97Q9P2B7 532 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 DNMT3LQ9UJW3 386 aa18.32■□□□□ 0.52
SHMT2-225ENST00000556798 LUC7L2Q9Y383 392 aaKnown RBP18.32■□□□□ 0.52
SHMT2-225ENST00000556798 PI4K2BG5E9Z4 385 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 ZNF263O14978 683 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 SART1O43290 800 aaKnown RBP18.31■□□□□ 0.52
SHMT2-225ENST00000556798 ALADP13716 330 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 ZNF75DP51815 510 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 KLHL30Q0D2K2 578 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 TAF5Q15542 800 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 CLEC16AQ2KHT3 1053 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 TRIM68Q6AZZ1 485 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 KLHDC10Q6PID8 442 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 TMC6Q7Z403 805 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 TADA2BQ86TJ2 420 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 EDAQ92838 391 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 CDK5RAP1Q96SZ6 601 aaKnown RBP18.31■□□□□ 0.52
SHMT2-225ENST00000556798 SYT11Q9BT88 431 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 SLC2A4RGQ9NR83 387 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 ABCC13Q9NSE7 274 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 WNT6Q9Y6F9 365 aa18.31■□□□□ 0.52
SHMT2-225ENST00000556798 GRAP2O75791 330 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 FYNP06241 537 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 UNGP13051 313 aaPredicted RBP18.3■□□□□ 0.52
SHMT2-225ENST00000556798 TCF3P15923 654 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 PRKCIP41743 596 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 TRIM14Q14142 442 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 ARHGAP29Q52LW3 1261 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 CC2D1AQ6P1N0 951 aaPredicted RBP18.3■□□□□ 0.52
SHMT2-225ENST00000556798 OLFML1Q6UWY5 402 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 MMS22LQ6ZRQ5 1243 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 ZNF571Q7Z3V5 609 aaPredicted RBP18.3■□□□□ 0.52
SHMT2-225ENST00000556798 ZNF276Q8N554 614 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 RNF139Q8WU17 664 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 C11orf70Q9BRQ4 267 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 KLF16Q9BXK1 252 aaPredicted RBP18.3■□□□□ 0.52
SHMT2-225ENST00000556798 MARCH2Q9P0N8 246 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 SFMBT1Q9UHJ3 866 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 FBXL21Q9UKT6 434 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 CA14Q9ULX7 337 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 NAALADL1Q9UQQ1 740 aa18.3■□□□□ 0.52
SHMT2-225ENST00000556798 ARNTLO00327 626 aa18.29■□□□□ 0.52
SHMT2-225ENST00000556798 CHADO15335 359 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms