RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 KRT19P08727 400 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 PFKLP17858 780 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 BDNFP23560 247 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 PCSK1P29120 753 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 ABCD1P33897 745 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 GRIK1P39086 918 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 WASP42768 502 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 LHX1P48742 406 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 PTK2Q05397 1052 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 SOWAHAQ2M3V2 549 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 FAM171BQ6P995 826 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 C4orf50Q6ZRC1 276 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 RABEPKQ7Z6M1 372 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 NAXDQ8IW45 347 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 PHTF2Q8N3S3 785 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 CSGALNACT2Q8N6G5 542 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 TOP6BLQ8N6T0 577 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 NAT16Q8N8M0 369 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 TRIML1Q8N9V2 468 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 CXorf38Q8TB03 319 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 ERLEC1Q96DZ1 483 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 SAAL1Q96ER3 474 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 CALML4Q96GE6 196 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 LRIG1Q96JA1 1093 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 HSPA12BQ96MM6 686 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 SYT15Q9BQS2 421 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 OCSTAMPQ9BR26 566 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 FAM213AQ9BRX8 229 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 GDAP2Q9NXN4 497 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 RAXQ9Y2V3 346 aa11.19□□□□□ -0.62
VPS29-208ENST00000550267 ASCC3Q8N3C0 2202 aaKnown RBP11.19□□□□□ -0.62
VPS29-208ENST00000550267 ANAPC1Q9H1A4 1944 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 PLXND1Q9Y4D7 1925 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 DSPP15924 2871 aaKnown RBP11.18□□□□□ -0.62
VPS29-208ENST00000550267 A0A1W2PQD8 194 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 TBC1D3BA6NDS4 549 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.18□□□□□ -0.62
VPS29-208ENST00000550267 GJB3O75712 270 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 OAS1P00973 400 aaKnown RBP11.18□□□□□ -0.62
VPS29-208ENST00000550267 HOXB2P14652 356 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 LMO2P25791 158 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 RELBQ01201 579 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 CYP27A1Q02318 531 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 SLC14A1Q13336 389 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 PLEKHG6Q3KR16 790 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 RILPL1Q5EBL4 403 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 LY6G5CQ5SRR4 150 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 VSTM1Q6UX27 236 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 BRSK2Q8IWQ3 736 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 RGL4Q8IZJ4 473 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 ZNF513Q8N8E2 541 aaPredicted RBP11.18□□□□□ -0.62
VPS29-208ENST00000550267 KIAA1958Q8N8K9 716 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 CACTINQ8WUQ7 758 aaKnown RBP11.18□□□□□ -0.62
VPS29-208ENST00000550267 RAD54LQ92698 747 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 INSM2Q96T92 566 aaPredicted RBP11.18□□□□□ -0.62
VPS29-208ENST00000550267 TTLL2Q9BWV7 592 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 ST6GALNAC4Q9H4F1 302 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 CRTAC1Q9NQ79 661 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 SIX4Q9UIU6 781 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 ITGA11Q9UKX5 1188 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 HCN2Q9UL51 889 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 CYP8B1Q9UNU6 501 aa11.18□□□□□ -0.62
VPS29-208ENST00000550267 FASNP49327 2511 aaKnown RBP11.17□□□□□ -0.62
VPS29-208ENST00000550267 SMG1Q96Q15 3661 aaKnown RBP11.17□□□□□ -0.62
VPS29-208ENST00000550267 A0A1W2PQF6 199 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 TRIM24O15164 1050 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 TULP3O75386 442 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 MBL2P11226 248 aaPredicted RBP11.17□□□□□ -0.62
VPS29-208ENST00000550267 ANXA13P27216 316 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 UBA7P41226 1012 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 RBP5P82980 135 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 GAD2Q05329 585 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 KCNA1Q09470 495 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 TAF10Q12962 218 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 POSTNQ15063 836 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 NR6A1Q15406 480 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 C10orf76Q5T2E6 689 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 ARL6IP4Q66PJ3 421 aaKnown RBP11.17□□□□□ -0.62
VPS29-208ENST00000550267 MCTP1Q6DN14 999 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 TOGARAM2Q6ZUX3 1019 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 ZNF720Q7Z2F6 126 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 TRMT11Q7Z4G4 463 aaKnown RBP11.17□□□□□ -0.62
VPS29-208ENST00000550267 SLCO6A1Q86UG4 719 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 SFR1Q86XK3 245 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 MIB1Q86YT6 1006 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 ETFBKMTQ8IXQ9 262 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 KBTBD7Q8WVZ9 684 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 MTMR12Q9C0I1 747 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 CD93Q9NPY3 652 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 RBAKQ9NYW8 714 aaPredicted RBP11.17□□□□□ -0.62
VPS29-208ENST00000550267 CDH9Q9ULB4 789 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 APOBEC2Q9Y235 224 aaKnown RBP11.17□□□□□ -0.62
VPS29-208ENST00000550267 FREM2Q5SZK8 3169 aa11.17□□□□□ -0.62
VPS29-208ENST00000550267 ANKRD11Q6UB99 2663 aaPredicted RBP11.16□□□□□ -0.62
VPS29-208ENST00000550267 CDC14CA4D256 554 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 GOLGA8IPA6NC78 632 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 GOLGA8JA6NMD2 632 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 EIF4E1BA6NMX2 242 aaKnown RBP11.16□□□□□ -0.62
VPS29-208ENST00000550267 F8VP50 259 aa11.16□□□□□ -0.62
VPS29-208ENST00000550267 SLC26A4O43511 780 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms