RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 M0QZ92 97 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 CREB3O43889 395 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 ITGB1P05556 798 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 KRT15P19012 456 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 DRD4P21917 467 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 PTPN7P35236 360 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 NUMBP49757 651 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 BCAT1P54687 386 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 CAV1Q03135 178 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 DRICH1Q6PGQ1 229 aaPredicted RBP11.54□□□□□ -0.56
CUX1-212ENST00000547394 AGMOQ6ZNB7 445 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 AGGF1Q8N302 714 aaeCLIP11.54□□□□□ -0.562e-7■■■■■ 57.8
CUX1-212ENST00000547394 PYROXD1Q8WU10 500 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 KIAA1257Q9ULG3 409 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 AP4E1Q9UPM8 1137 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 DERAQ9Y315 318 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 FARP1Q9Y4F1 1045 aaPredicted RBP11.54□□□□□ -0.56
CUX1-212ENST00000547394 TCP11X1B4DZS4 312 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 DUSP11O75319 330 aaKnown RBP11.54□□□□□ -0.56
CUX1-212ENST00000547394 APRTP07741 180 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 CYBAP13498 195 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 KCNE1P15382 129 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 PTPN1P18031 435 aaKnown RBP11.54□□□□□ -0.56
CUX1-212ENST00000547394 SULT1E1P49888 294 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 MORF4L2Q15014 288 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 NOMO1Q15155 1222 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 TAZQ16635 292 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 C3orf62Q6ZUJ4 267 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 NAT8LQ8N9F0 302 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 FAF2Q96CS3 445 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 CHMP6Q96FZ7 201 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 CFAP36Q96G28 342 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 SEC16BQ96JE7 1060 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 ZNF560Q96MR9 790 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 PPP1R10Q96QC0 940 aaKnown RBP11.54□□□□□ -0.56
CUX1-212ENST00000547394 TMEM209Q96SK2 561 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 LGMNQ99538 433 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 MTG1Q9BT17 334 aaPredicted RBP11.54□□□□□ -0.56
CUX1-212ENST00000547394 KATNAL1Q9BW62 490 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 UBN1Q9NPG3 1134 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 XPNPEP3Q9NQH7 507 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 FGFR1OP2Q9NVK5 253 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 TTC3P53804 2025 aa11.54□□□□□ -0.56
CUX1-212ENST00000547394 APOL1O14791 398 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 FAM155BO75949 473 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 USP17L7P0C7H9 530 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 PRKAR2AP13861 404 aaKnown RBP11.53□□□□□ -0.56
CUX1-212ENST00000547394 GSCP56915 257 aaPredicted RBP11.53□□□□□ -0.56
CUX1-212ENST00000547394 SV2CQ496J9 727 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 DSTYKQ6XUX3 929 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 FAM47EQ6ZV65 393 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 CENPUQ71F23 418 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 PPIL6Q8IXY8 311 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 BBOF1Q8ND07 529 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 FBF1Q8TES7 1133 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 SOCS4Q8WXH5 440 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 SERPINB12Q96P63 405 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 ALG13Q9NP73 1137 aaKnown RBP11.53□□□□□ -0.56
CUX1-212ENST00000547394 ANLNQ9NQW6 1124 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 MTMR10Q9NXD2 777 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 RNF186Q9NXI6 227 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 PADI3Q9ULW8 664 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 MAGED2Q9UNF1 606 aaPredicted RBP11.53□□□□□ -0.56
CUX1-212ENST00000547394 B3GAT3O94766 335 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 ZBED1O96006 694 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 F7P08709 466 aaPredicted RBP11.53□□□□□ -0.56
CUX1-212ENST00000547394 GNAT1P11488 350 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 L1CAMP32004 1257 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 ELK3P41970 407 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 TKTL1P51854 596 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 CRADDP78560 199 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 OLIG2Q13516 323 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 TNFAIP8L3Q5GJ75 292 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 BSPRYQ5W0U4 402 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 MFSD5Q6N075 450 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 CLEC20AQ6ZU45 233 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 UNC93AQ86WB7 457 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 CRYBG2Q8N1P7 616 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 PCED1BQ96HM7 432 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 ZNF317Q96PQ6 595 aaPredicted RBP11.53□□□□□ -0.56
CUX1-212ENST00000547394 USP29Q9HBJ7 922 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 SEPT10Q9P0V9 454 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 CDH23Q9H251 3354 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 WDR91A4D1P6 747 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 YJEFN3A6XGL0 299 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 E7ENQ6 273 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 M0QYT0 321 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 YWHAGP61981 247 aaKnown RBP eCLIP11.53□□□□□ -0.56
CUX1-212ENST00000547394 CDC42EP1Q00587 391 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 TIGD5Q53EQ6 642 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 ARHGAP17Q68EM7 881 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 TMEM109Q9BVC6 243 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 ULBP1Q9BZM6 244 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 NRDE2Q9H7Z3 1164 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 CNOT10Q9H9A5 744 aaKnown RBP11.53□□□□□ -0.56
CUX1-212ENST00000547394 LRRC4Q9HBW1 653 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 GDAP2Q9NXN4 497 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 NUDT5Q9UKK9 219 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 TRPV2Q9Y5S1 764 aa11.53□□□□□ -0.56
CUX1-212ENST00000547394 A0A087WUV0 522 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms