RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 ZNF500O60304 480 aaPredicted RBP16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 RNF8O76064 485 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 ENDOD1O94919 500 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 PDGFRAP16234 1089 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 C2CD6Q53TS8 623 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 LRRC57Q8N9N7 239 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 GIPC2Q8TF65 315 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 RNF139Q8WU17 664 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 CENPIQ92674 756 aaPredicted RBP16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 SERPINB11Q96P15 392 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 SMOC2Q9H3U7 446 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 OSGEPQ9NPF4 335 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 TRMT1Q9NXH9 659 aaKnown RBP16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 MTCH2Q9Y6C9 303 aa16.75■□□□□ 0.27
PRPF40A-212ENST00000545856 HELZP42694 1942 aaKnown RBP16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 C2orf16Q68DN1 1984 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 SPDYE4A6NLX3 237 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 ESPNB1AK53 854 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 SOAT2O75908 522 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 GBP1P32455 592 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 FLT3P36888 993 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 USP46P62068 366 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 RPL7AP62424 266 aaKnown RBP16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 ITIH3Q06033 890 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 TCEAL5Q5H9L2 206 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 LRRC38Q5VT99 294 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 NYAP1Q6ZVC0 841 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 BNIPLQ7Z465 357 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 POLNQ7Z5Q5 900 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 DAAM2Q86T65 1068 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 PSTKQ8IV42 348 aaKnown RBP16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 RXFP2Q8WXD0 754 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 MRPS31Q92665 395 aaKnown RBP16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 PIWIL1Q96J94 861 aaKnown RBP16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 TBCBQ99426 244 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 NPY6RQ99463 290 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 LRRC3Q9BY71 257 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 PRDM12Q9H4Q4 367 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 JRKLQ9Y4A0 524 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 DUSP10Q9Y6W6 482 aa16.74■□□□□ 0.27
PRPF40A-212ENST00000545856 BRWD1Q9NSI6 2320 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 NUP210Q8TEM1 1887 aaPredicted RBP16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 ZNF840PA6NDX5 716 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 PIK3R2O00459 728 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 PER2O15055 1255 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 BUB1BO60566 1050 aaPredicted RBP16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 SLC2A3P11169 496 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 NCAM1P13591 858 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 PSMA2P25787 234 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 ETF1P62495 437 aaKnown RBP16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 HYAL1Q12794 435 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 GRIN2CQ14957 1233 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 CTC1Q2NKJ3 1217 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 HECTD3Q5T447 861 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 SDHAF4Q5VUM1 108 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 SND1Q7KZF4 910 aaKnown RBP eCLIP16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 SCD5Q86SK9 330 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 RBM23Q86U06 439 aaKnown RBP16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 DNAAF5Q86Y56 855 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 TMC8Q8IU68 726 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 DEFB106AQ8N104 65 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 VN1R2Q8NFZ6 395 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 JOSD2Q8TAC2 188 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 CLEC4CQ8WTT0 213 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 GMIPQ9P107 970 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 SALL4Q9UJQ4 1053 aa16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 MAGED2Q9UNF1 606 aaPredicted RBP16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.73■□□□□ 0.27
PRPF40A-212ENST00000545856 NOTCH4Q99466 2003 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 A0A1W2PQH9 124 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 GRID2IPA4D2P6 1211 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 USP27XA6NNY8 438 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 RFXAPO00287 272 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 PSTPIP1O43586 416 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 IGLV3-25P01717 112 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 F11P03951 625 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 FYNP06241 537 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 SPATA31D3P0C874 917 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 RDXP35241 583 aaKnown RBP16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 ZNF135P52742 658 aaPredicted RBP16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 ADAM15Q13444 863 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 MTMR3Q13615 1198 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 HADHQ16836 314 aaKnown RBP16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 ARHGAP15Q53QZ3 475 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 DCAF6Q58WW2 860 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 ANKRD54Q6NXT1 300 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 SPATA31D4Q6ZUB0 917 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 PDZD4Q76G19 769 aaPredicted RBP16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 RSRC2Q7L4I2 434 aaKnown RBP16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 PIAS4Q8N2W9 510 aaPredicted RBP16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 KIAA1958Q8N8K9 716 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 IL21Q9HBE4 155 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 TRIM10Q9UDY6 481 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 AMFRQ9UKV5 643 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 HBS1LQ9Y450 684 aaKnown RBP16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 CAPN6Q9Y6Q1 641 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 CDH23Q9H251 3354 aa16.72■□□□□ 0.27
PRPF40A-212ENST00000545856 CCDC195A0A1B0GUA6 201 aa16.71■□□□□ 0.27
PRPF40A-212ENST00000545856 CCDC66A2RUB6 948 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms