RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-215ENST00000543359 LRMPQ12912 555 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 SIM2Q14190 667 aaPredicted RBP13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 LPAL2Q16609 132 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 PKDCCQ504Y2 493 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 PM20D1Q6GTS8 502 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 TFAP2BQ92481 460 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 KAT5Q92993 513 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 PNKPQ96T60 521 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 DNAI2Q9GZS0 605 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 CLIC5Q9NZA1 410 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 CHMP5Q9NZZ3 219 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 KIAA1468Q9P260 1216 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 EBF1Q9UH73 591 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 HCN2Q9UL51 889 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 SH3BP1Q9Y3L3 701 aa13.8□□□□□ -0.2
TNFRSF1A-215ENST00000543359 BICDL2A1A5D9 508 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 O00370 1275 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 P4HA2O15460 535 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 HOXC11O43248 304 aaPredicted RBP13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 GABBR2O75899 941 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 KAT7O95251 611 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 KLKB1P03952 638 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 IRF1P10914 325 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 HNRNPLP14866 589 aaKnown RBP eCLIP13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 ZNF132P52740 706 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 PDE4CQ08493 712 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 PAK1Q13153 545 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 DMC1Q14565 340 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 CAMK4Q16566 473 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 CCDC40Q4G0X9 1142 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 C2orf27AQ580R0 203 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 LAIR1Q6GTX8 287 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 Q6ZNB5 142 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 TRIML1Q8N9V2 468 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 EHBP1Q8NDI1 1231 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 GAB3Q8WWW8 586 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 RMDN1Q96DB5 314 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 HHIPQ96QV1 700 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 SRRTQ9BXP5 876 aaKnown RBP13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 SPHK2Q9NRA0 654 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 NCDNQ9UBB6 729 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 DNMT3LQ9UJW3 386 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 NAGPAQ9UK23 515 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 TSPAN16Q9UKR8 245 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 KIAA1257Q9ULG3 409 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 SLC8A2Q9UPR5 921 aa13.79□□□□□ -0.2
TNFRSF1A-215ENST00000543359 ABCA7Q8IZY2 2146 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 XPO1O14980 1071 aaKnown RBP13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 TRIM24O15164 1050 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 TULP3O75386 442 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 GNA14O95837 355 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 RETP07949 1114 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 VDRP11473 427 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 TBXAS1P24557 533 aaPredicted RBP13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 GRIA2P42262 883 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 TNFRSF4P43489 277 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 KIR2DL1P43626 348 aaPredicted RBP13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 PLA2G4AP47712 749 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 YWHAEP62258 255 aaKnown RBP13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 MRPS21P82921 87 aaKnown RBP13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 GAD2Q05329 585 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 KCNH2Q12809 1159 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 GOLGA7BQ2TAP0 167 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 SGO2Q562F6 1265 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 C10orf120Q5SQS8 335 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 EMC10Q5UCC4 262 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 LCLAT1Q6UWP7 414 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 PRR23BQ6ZRT6 265 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 IRF2BP1Q8IU81 584 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 ARHGEF19Q8IW93 802 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 FAM160A2Q8N612 972 aaPredicted RBP13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 CCDC26Q8TAB7 109 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 NDRG1Q92597 394 aaKnown RBP13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 KREMEN1Q96MU8 473 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 HINFPQ9BQA5 517 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 NACA2Q9H009 215 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 ARHGEF4Q9NR80 690 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 MARK1Q9P0L2 795 aa13.78□□□□□ -0.2
TNFRSF1A-215ENST00000543359 CNOT1A5YKK6 2376 aaKnown RBP13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 ADAM23O75077 832 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 STC2O76061 302 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 APBB3O95704 486 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 ZBED1O96006 694 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 CALCAP01258 141 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 PAEPP09466 180 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 ID4P47928 161 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 TKTL1P51854 596 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 BCAT1P54687 386 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 SEC13P55735 322 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 GCNT1Q02742 428 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 RALGAPA1Q6GYQ0 2036 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 TMEM270Q6UE05 265 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 TMEM92Q6UXU6 159 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 RRAGAQ7L523 313 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 KBTBD6Q86V97 674 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 GPR161Q8N6U8 529 aaKnown RBP13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 NAT16Q8N8M0 369 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 IL17RCQ8NAC3 791 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 UBA3Q8TBC4 463 aa13.77□□□□□ -0.21
TNFRSF1A-215ENST00000543359 SLC35F5Q8WV83 523 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms