RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 MAN1A1P33908 653 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 RFC1P35251 1148 aaPredicted RBP11.06□□□□□ -0.64
VPS33A-204ENST00000540669 DEKP35659 375 aaKnown RBP11.06□□□□□ -0.64
VPS33A-204ENST00000540669 CCR2P41597 374 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 PTPN9P43378 593 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 ALDH1A3P47895 512 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 SNX16P57768 344 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 RPL7AP62424 266 aaKnown RBP11.06□□□□□ -0.64
VPS33A-204ENST00000540669 C11orf63Q6NUN7 778 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 DNAJC24Q6P3W2 148 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 KLHDC10Q6PID8 442 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 SPATA31D4Q6ZUB0 917 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 CYP4V2Q6ZWL3 525 aaPredicted RBP11.06□□□□□ -0.64
VPS33A-204ENST00000540669 GAREM2Q75VX8 874 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 DNAJB7Q7Z6W7 309 aaPredicted RBP11.06□□□□□ -0.64
VPS33A-204ENST00000540669 ITIH5Q86UX2 942 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 MON1AQ86VX9 555 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 SCUBE3Q8IX30 993 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 SIX6OS1Q8N1H7 587 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 LEMD2Q8NC56 503 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 PDZD8Q8NEN9 1154 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 GPR152Q8TDT2 470 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 CALR3Q96L12 384 aaKnown RBP11.06□□□□□ -0.64
VPS33A-204ENST00000540669 NPY6RQ99463 290 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 DDX23Q9BUQ8 820 aaKnown RBP11.06□□□□□ -0.64
VPS33A-204ENST00000540669 S1PR5Q9H228 398 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 SMOC2Q9H3U7 446 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 OSGEPQ9NPF4 335 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 ST7Q9NRC1 585 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 PARVAQ9NVD7 372 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS33A-204ENST00000540669 EHD2Q9NZN4 543 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 GMIPQ9P107 970 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 TRIM10Q9UDY6 481 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 CAPN6Q9Y6Q1 641 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 DUSP10Q9Y6W6 482 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 COL6A3P12111 3177 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 COL4A2P08572 1712 aa11.06□□□□□ -0.64
VPS33A-204ENST00000540669 ZNF840PA6NDX5 716 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 SOBPA7XYQ1 873 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 GJB6O95452 261 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 IGLV3-27P01718 113 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 USP17L7P0C7H9 530 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 LCP1P13796 627 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 HOXB8P17481 243 aaPredicted RBP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 PFKLP17858 780 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 YWHAQP27348 245 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 ELF1P32519 619 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 PPP3CCP48454 512 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 EPHB3P54753 998 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 TAF10Q12962 218 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 NNTQ13423 1086 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 VEPH1Q14D04 833 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 EFHC1Q5JVL4 640 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 PPM1LQ5SGD2 360 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 ARTNQ5T4W7 220 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 FAM102AQ5T9C2 384 aaPredicted RBP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 ANKRD54Q6NXT1 300 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 GPR149Q86SP6 731 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 RNF10Q8N5U6 811 aaKnown RBP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 ARFGAP1Q8N6T3 406 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 TPCN2Q8NHX9 752 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 ZNF564Q8TBZ8 553 aaPredicted RBP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 GIPC2Q8TF65 315 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 NDRG1Q92597 394 aaKnown RBP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 CD101Q93033 1021 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 HLA-CQ95604 372 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 PABPC5Q96DU9 382 aaKnown RBP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 ZFRQ96KR1 1074 aaKnown RBP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 NUP85Q9BW27 656 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 TSGA10Q9BZW7 698 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 POPDC2Q9HBU9 364 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 METTL5Q9NRN9 209 aaKnown RBP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 CALCOCO1Q9P1Z2 691 aa11.05□□□□□ -0.64
VPS33A-204ENST00000540669 DNMT3BQ9UBC3 853 aaKnown RBP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 UXTQ9UBK9 157 aaPredicted RBP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 CHORDC1Q9UHD1 332 aaPredicted RBP11.05□□□□□ -0.64
VPS33A-204ENST00000540669 A0A1W2PQH9 124 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 GRID2IPA4D2P6 1211 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 GOLGA6L9A6NEM1 432 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 PIK3R2O00459 728 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 FANCGO15287 622 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 LRG1P02750 347 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 KRT3P12035 628 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 WEE1P30291 646 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 MATKP42679 507 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 ZNF143P52747 638 aaPredicted RBP11.04□□□□□ -0.64
VPS33A-204ENST00000540669 YWHAGP61981 247 aaKnown RBP eCLIP11.04□□□□□ -0.64
VPS33A-204ENST00000540669 YWHAZP63104 245 aaKnown RBP11.04□□□□□ -0.64
VPS33A-204ENST00000540669 PITX1P78337 314 aaPredicted RBP11.04□□□□□ -0.64
VPS33A-204ENST00000540669 DLX2Q07687 328 aaPredicted RBP11.04□□□□□ -0.64
VPS33A-204ENST00000540669 KIF5AQ12840 1032 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 SLC5A9Q2M3M2 681 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 PUS10Q3MIT2 529 aaKnown RBP11.04□□□□□ -0.64
VPS33A-204ENST00000540669 BSPRYQ5W0U4 402 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 NYAP1Q6ZVC0 841 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 RBM23Q86U06 439 aaKnown RBP11.04□□□□□ -0.64
VPS33A-204ENST00000540669 ARHGAP18Q8N392 663 aa11.04□□□□□ -0.64
VPS33A-204ENST00000540669 TXLNBQ8N3L3 684 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms