RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 RAPGEF1Q13905 1077 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 KCNAB1Q14722 419 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 MINDY4Q4G0A6 757 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 FAM102BQ5T8I3 360 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 VSTM1Q6UX27 236 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 USP49Q70CQ1 688 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 SESTD1Q86VW0 696 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 C12orf76Q8N812 135 aaPredicted RBP4.27□□□□□ -1.73
VPS13A-213ENST00000539950 WASF1Q92558 559 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 CHST8Q9H2A9 424 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 C1orf112Q9NSG2 853 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 PI4KBQ9UBF8 816 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 HEY2Q9UBP5 337 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 DKK4Q9UBT3 224 aa4.27□□□□□ -1.73
VPS13A-213ENST00000539950 NKX1-2Q9UD57 310 aaPredicted RBP4.27□□□□□ -1.73
VPS13A-213ENST00000539950 A8MVJ9 347 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 FYB1O15117 783 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 MYF5P13349 255 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 TPH1P17752 444 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 GPC5P78333 572 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 ID2Q02363 134 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 SRSF1Q07955 248 aaKnown RBP eCLIP4.26□□□□□ -1.73
VPS13A-213ENST00000539950 TWIST1Q15672 202 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 LEXMQ3ZCV2 418 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 ARHGAP29Q52LW3 1261 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 CC2D1BQ5T0F9 858 aaKnown RBP4.26□□□□□ -1.73
VPS13A-213ENST00000539950 TMEM63BQ5T3F8 832 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 RUSC1-AS1Q66K80 236 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 CRELD2Q6UXH1 353 aaPredicted RBP4.26□□□□□ -1.73
VPS13A-213ENST00000539950 DEF8Q6ZN54 512 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 ZDHHC17Q8IUH5 632 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 FAM156AQ8NDB6 213 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 NSMCE1Q8WV22 266 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 FAM204AQ9H8W3 233 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 DDX20Q9UHI6 824 aaKnown RBP4.26□□□□□ -1.73
VPS13A-213ENST00000539950 CACNA1IQ9P0X4 2223 aa4.26□□□□□ -1.73
VPS13A-213ENST00000539950 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.25□□□□□ -1.73
VPS13A-213ENST00000539950 AQP7P3A6NL99 342 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 CA12O43570 354 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 PRAMEF2O60811 474 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 CNOT3O75175 753 aaKnown RBP4.25□□□□□ -1.73
VPS13A-213ENST00000539950 CTSAP10619 480 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 BTF3P20290 206 aaKnown RBP4.25□□□□□ -1.73
VPS13A-213ENST00000539950 TKTP29401 623 aaKnown RBP4.25□□□□□ -1.73
VPS13A-213ENST00000539950 NFE2Q16621 373 aaPredicted RBP4.25□□□□□ -1.73
VPS13A-213ENST00000539950 RNF220Q5VTB9 566 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 PLAG1Q6DJT9 500 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 ANO7Q6IWH7 933 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 CLEC9AQ6UXN8 241 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 UNC13DQ70J99 1090 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.25□□□□□ -1.73
VPS13A-213ENST00000539950 MAGEB6Q8N7X4 407 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 PNPLA1Q8N8W4 532 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 ZNF548Q8NEK5 533 aaPredicted RBP4.25□□□□□ -1.73
VPS13A-213ENST00000539950 LRTOMTQ8WZ04 291 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 HIST1H2AAQ96QV6 131 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 LRRC27Q9C0I9 530 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 USP29Q9HBJ7 922 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 ZNF287Q9HBT7 754 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 VPS51Q9UID3 782 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 ZNF580Q9UK33 172 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 ITGB1BP2Q9UKP3 347 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 OGDHLQ9ULD0 1010 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 FZD4Q9ULV1 537 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 SLC27A6Q9Y2P4 619 aa4.25□□□□□ -1.73
VPS13A-213ENST00000539950 MAP4K4O95819 1239 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-213ENST00000539950 CD19P15391 556 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 ADRA1DP25100 572 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 CCKBRP32239 447 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 CACNB3P54284 484 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 RPS13P62277 151 aaKnown RBP4.24□□□□□ -1.73
VPS13A-213ENST00000539950 POLD3Q15054 466 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-213ENST00000539950 PLEKHG6Q3KR16 790 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 KLHL22Q53GT1 634 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 NXNQ6DKJ4 435 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 CCDC149Q6ZUS6 474 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 ANKRD13BQ86YJ7 626 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 YAF2Q8IY57 180 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 TCEAL8Q8IYN2 117 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 C16orf71Q8IYS4 520 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-213ENST00000539950 APIPQ96GX9 242 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 PRR11Q96HE9 360 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-213ENST00000539950 HIC2Q96JB3 615 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 ZNF668Q96K58 619 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-213ENST00000539950 FAM83DQ9H4H8 585 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 AS3MTQ9HBK9 375 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 DNAJB11Q9UBS4 358 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 RGS17Q9UGC6 210 aaPredicted RBP4.24□□□□□ -1.73
VPS13A-213ENST00000539950 STEAP1Q9UHE8 339 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 TTC3P53804 2025 aa4.24□□□□□ -1.73
VPS13A-213ENST00000539950 FAM90A10PA6NDY2 464 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 CD8B2A6NJW9 211 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 TPP1O14773 563 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 MBPP02686 304 aaPredicted RBP4.23□□□□□ -1.73
VPS13A-213ENST00000539950 S100BP04271 92 aaPredicted RBP4.23□□□□□ -1.73
VPS13A-213ENST00000539950 PSG1P11464 419 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 SCP2P22307 547 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 HTR7P34969 479 aa4.23□□□□□ -1.73
VPS13A-213ENST00000539950 CARSP49589 748 aaKnown RBP4.23□□□□□ -1.73
VPS13A-213ENST00000539950 COPAP53621 1224 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms