RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 MRGPRX1Q96LB2 322 aa8.8□□□□□ -1
CD44-232ENST00000531118 TSPAN18Q96SJ8 248 aa8.8□□□□□ -1
CD44-232ENST00000531118 ACOX2Q99424 681 aa8.8□□□□□ -1
CD44-232ENST00000531118 PKMYT1Q99640 499 aa8.8□□□□□ -1
CD44-232ENST00000531118 GABRG3Q99928 467 aa8.8□□□□□ -1
CD44-232ENST00000531118 RPF1Q9H9Y2 349 aaKnown RBP8.8□□□□□ -1
CD44-232ENST00000531118 SMPD4Q9NXE4 827 aa8.8□□□□□ -1
CD44-232ENST00000531118 CFAP97Q9P2B7 532 aa8.8□□□□□ -1
CD44-232ENST00000531118 FTSJ1Q9UET6 329 aa8.8□□□□□ -1
CD44-232ENST00000531118 RAD54BQ9Y620 910 aa8.8□□□□□ -1
CD44-232ENST00000531118 AK5Q9Y6K8 562 aa8.8□□□□□ -1
CD44-232ENST00000531118 PLXNA2O75051 1894 aa8.8□□□□□ -1
CD44-232ENST00000531118 ARID1BQ8NFD5 2236 aaPredicted RBP8.79□□□□□ -1
CD44-232ENST00000531118 COL12A1Q99715 3063 aa8.79□□□□□ -1
CD44-232ENST00000531118 OGTO15294 1046 aa8.79□□□□□ -1
CD44-232ENST00000531118 BRINP1O60477 761 aa8.79□□□□□ -1
CD44-232ENST00000531118 CDC45O75419 566 aa8.79□□□□□ -1
CD44-232ENST00000531118 FBXO45P0C2W1 286 aa8.79□□□□□ -1
CD44-232ENST00000531118 ACAT1P24752 427 aaKnown RBP8.79□□□□□ -1
CD44-232ENST00000531118 MCM7P33993 719 aa8.79□□□□□ -1
CD44-232ENST00000531118 CSRP3P50461 194 aa8.79□□□□□ -1
CD44-232ENST00000531118 MCCD1P59942 119 aaPredicted RBP8.79□□□□□ -1
CD44-232ENST00000531118 GAD2Q05329 585 aa8.79□□□□□ -1
CD44-232ENST00000531118 LY6DQ14210 128 aa8.79□□□□□ -1
CD44-232ENST00000531118 RTP5Q14D33 572 aa8.79□□□□□ -1
CD44-232ENST00000531118 SUZ12Q15022 739 aaKnown RBP8.79□□□□□ -1
CD44-232ENST00000531118 KYAT1Q16773 422 aa8.79□□□□□ -1
CD44-232ENST00000531118 INAVAQ3KP66 663 aa8.79□□□□□ -1
CD44-232ENST00000531118 CFAP221Q4G0U5 840 aa8.79□□□□□ -1
CD44-232ENST00000531118 PKDCCQ504Y2 493 aa8.79□□□□□ -1
CD44-232ENST00000531118 BMP2KLQ5H9B9 411 aa8.79□□□□□ -1
CD44-232ENST00000531118 ERICH1Q86X53 443 aa8.79□□□□□ -1
CD44-232ENST00000531118 CD302Q8IX05 232 aa8.79□□□□□ -1
CD44-232ENST00000531118 DIS3L2Q8IYB7 885 aaKnown RBP8.79□□□□□ -1
CD44-232ENST00000531118 CHPFQ8IZ52 775 aa8.79□□□□□ -1
CD44-232ENST00000531118 ADGRG2Q8IZP9 1017 aa8.79□□□□□ -1
CD44-232ENST00000531118 TOE1Q96GM8 510 aaKnown RBP8.79□□□□□ -1
CD44-232ENST00000531118 POM121Q96HA1 1249 aa8.79□□□□□ -1
CD44-232ENST00000531118 TMEM176AQ96HP8 235 aa8.79□□□□□ -1
CD44-232ENST00000531118 ZNF560Q96MR9 790 aa8.79□□□□□ -1
CD44-232ENST00000531118 OCSTAMPQ9BR26 566 aa8.79□□□□□ -1
CD44-232ENST00000531118 GPR174Q9BXC1 333 aa8.79□□□□□ -1
CD44-232ENST00000531118 IRX2Q9BZI1 471 aaPredicted RBP8.79□□□□□ -1
CD44-232ENST00000531118 NRSN2Q9GZP1 204 aa8.79□□□□□ -1
CD44-232ENST00000531118 C17orf75Q9HAS0 396 aa8.79□□□□□ -1
CD44-232ENST00000531118 DDX19AQ9NUU7 478 aaKnown RBP8.79□□□□□ -1
CD44-232ENST00000531118 WSB2Q9NYS7 404 aaPredicted RBP8.79□□□□□ -1
CD44-232ENST00000531118 USP36Q9P275 1121 aaKnown RBP8.79□□□□□ -1
CD44-232ENST00000531118 KIAA1024Q9UPX6 916 aa8.79□□□□□ -1
CD44-232ENST00000531118 MAP4K5Q9Y4K4 846 aa8.79□□□□□ -1
CD44-232ENST00000531118 PCDHGA1Q9Y5H4 931 aa8.79□□□□□ -1
CD44-232ENST00000531118 E9PMD0 336 aa8.78□□□□□ -1
CD44-232ENST00000531118 HNRNPDLO14979 420 aaKnown RBP8.78□□□□□ -1
CD44-232ENST00000531118 TRIM24O15164 1050 aa8.78□□□□□ -1
CD44-232ENST00000531118 RFPL3O75679 317 aa8.78□□□□□ -1
CD44-232ENST00000531118 OAS1P00973 400 aaKnown RBP8.78□□□□□ -1
CD44-232ENST00000531118 JUPP14923 745 aa8.78□□□□□ -1
CD44-232ENST00000531118 LIG4P49917 911 aa8.78□□□□□ -1
CD44-232ENST00000531118 TMPRSS3P57727 454 aa8.78□□□□□ -1
CD44-232ENST00000531118 TBC1D25Q3MII6 688 aa8.78□□□□□ -1
CD44-232ENST00000531118 SV2CQ496J9 727 aa8.78□□□□□ -1
CD44-232ENST00000531118 HES3Q5TGS1 186 aa8.78□□□□□ -1
CD44-232ENST00000531118 GRAMD4Q6IC98 578 aa8.78□□□□□ -1
CD44-232ENST00000531118 RUFY3Q7L099 469 aa8.78□□□□□ -1
CD44-232ENST00000531118 PRICKLE2Q7Z3G6 844 aa8.78□□□□□ -1
CD44-232ENST00000531118 DDX42Q86XP3 938 aaKnown RBP eCLIP8.78□□□□□ -1
CD44-232ENST00000531118 SCN4BQ8IWT1 228 aa8.78□□□□□ -1
CD44-232ENST00000531118 PDCL2Q8N4E4 241 aa8.78□□□□□ -1
CD44-232ENST00000531118 NAT16Q8N8M0 369 aa8.78□□□□□ -1
CD44-232ENST00000531118 CADM4Q8NFZ8 388 aa8.78□□□□□ -1
CD44-232ENST00000531118 C1orf216Q8TAB5 229 aa8.78□□□□□ -1
CD44-232ENST00000531118 SNX29Q8TEQ0 813 aa8.78□□□□□ -1
CD44-232ENST00000531118 TTC9Q92623 222 aa8.78□□□□□ -1
CD44-232ENST00000531118 FGF11Q92914 225 aa8.78□□□□□ -1
CD44-232ENST00000531118 FUBP3Q96I24 572 aaKnown RBP eCLIP8.78□□□□□ -1
CD44-232ENST00000531118 CDK15Q96Q40 435 aa8.78□□□□□ -1
CD44-232ENST00000531118 LGMNQ99538 433 aa8.78□□□□□ -1
CD44-232ENST00000531118 TRIM4Q9C037 500 aa8.78□□□□□ -1
CD44-232ENST00000531118 TRPM5Q9NZQ8 1165 aa8.78□□□□□ -1
CD44-232ENST00000531118 DEC1Q9P2X7 70 aa8.78□□□□□ -1
CD44-232ENST00000531118 ORC3Q9UBD5 711 aaPredicted RBP8.78□□□□□ -1
CD44-232ENST00000531118 EIF2B4Q9UI10 523 aaKnown RBP8.78□□□□□ -1
CD44-232ENST00000531118 L1RE1Q9UN81 338 aa8.78□□□□□ -1
CD44-232ENST00000531118 DERAQ9Y315 318 aa8.78□□□□□ -1
CD44-232ENST00000531118 STARD13Q9Y3M8 1113 aa8.78□□□□□ -1
CD44-232ENST00000531118 C2CD2Q9Y426 696 aa8.78□□□□□ -1
CD44-232ENST00000531118 SNX11Q9Y5W9 270 aa8.78□□□□□ -1
CD44-232ENST00000531118 SLCO1B1Q9Y6L6 691 aa8.78□□□□□ -1
CD44-232ENST00000531118 SPTBN1Q01082 2364 aaKnown RBP8.78□□□□□ -1
CD44-232ENST00000531118 ANKRD17O75179 2603 aaKnown RBP8.77□□□□□ -1.01
CD44-232ENST00000531118 E2F8A0AVK6 867 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 TTC24A2A3L6 582 aaPredicted RBP8.77□□□□□ -1.01
CD44-232ENST00000531118 KPNA7A9QM74 516 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 HCRTO43612 131 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 PCDHGA12O60330 932 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 CTDNEP1O95476 244 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 MBL2P11226 248 aaPredicted RBP8.77□□□□□ -1.01
CD44-232ENST00000531118 PLS3P13797 630 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 GUCY2CP25092 1073 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 ACTN2P35609 894 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms