RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 PARD3BQ8TEW8 1205 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 KBTBD7Q8WVZ9 684 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 ZNF516Q92618 1163 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 CCDC127Q96BQ5 260 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 FAM84AQ96KN4 292 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 ZDHHC5Q9C0B5 715 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 GZF1Q9H116 711 aaPredicted RBP11.19□□□□□ -0.62
CPSF1-203ENST00000527916 KCTD10Q9H3F6 313 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 VRTNQ9H8Y1 702 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 ARHGEF4Q9NR80 690 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 EXOC1Q9NV70 894 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 EHD2Q9NZN4 543 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 MAGEC2Q9UBF1 373 aaPredicted RBP11.19□□□□□ -0.62
CPSF1-203ENST00000527916 DKK4Q9UBT3 224 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 SUSD2Q9UGT4 822 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 MYOFQ9NZM1 2061 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 KNL1Q8NG31 2342 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 PCDH15Q96QU1 1955 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 A0A0A0MRY4 1105 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 ANTXRLA6NF34 631 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 LEFTY2O00292 366 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 ADAM23O75077 832 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 ZNF217O75362 1048 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 KIF20AO95235 890 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 CYP17A1P05093 508 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 LMO2P25791 158 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 GNL1P36915 607 aaPredicted RBP11.18□□□□□ -0.62
CPSF1-203ENST00000527916 KIR2DL1P43626 348 aaPredicted RBP11.18□□□□□ -0.62
CPSF1-203ENST00000527916 DHCR24Q15392 516 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 GAB4Q2WGN9 574 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 TOGARAM2Q6ZUX3 1019 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 FILIP1Q7Z7B0 1213 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 GLRX5Q86SX6 157 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 SCN4BQ8IWT1 228 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 RGL4Q8IZJ4 473 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 ADGRG2Q8IZP9 1017 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 SYAP1Q96A49 352 aaPredicted RBP11.18□□□□□ -0.62
CPSF1-203ENST00000527916 SPATA17Q96L03 361 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 UBL7Q96S82 380 aaPredicted RBP11.18□□□□□ -0.62
CPSF1-203ENST00000527916 MMS19Q96T76 1030 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 SYT15Q9BQS2 421 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 TRPM5Q9NZQ8 1165 aa11.18□□□□□ -0.62
CPSF1-203ENST00000527916 SHROOM3Q8TF72 1996 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 CABIN1Q9Y6J0 2220 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 HELZP42694 1942 aaKnown RBP11.17□□□□□ -0.62
CPSF1-203ENST00000527916 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.17□□□□□ -0.62
CPSF1-203ENST00000527916 TBC1D3BA6NDS4 549 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 TK2O00142 265 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 ATP2C2O75185 946 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 GJB3O75712 270 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 RHOBTB3O94955 611 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 C4BPAP04003 597 aaKnown RBP11.17□□□□□ -0.62
CPSF1-203ENST00000527916 RPN1P04843 607 aaKnown RBP11.17□□□□□ -0.62
CPSF1-203ENST00000527916 SLC6A11P48066 632 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 NDUFA8P51970 172 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 TRPC3Q13507 836 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 NFIL3Q16649 462 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 WDR72Q3MJ13 1102 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 EMC10Q5UCC4 262 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 TRIML1Q8N9V2 468 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 MYCBPAPQ8TBZ2 947 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 CCDC47Q96A33 483 aaKnown RBP11.17□□□□□ -0.62
CPSF1-203ENST00000527916 HSPA12BQ96MM6 686 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 XYLT2Q9H1B5 865 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 SNX25Q9H3E2 840 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 CRTAC1Q9NQ79 661 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 CACNA2D2Q9NY47 1150 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 CALCOCO1Q9P1Z2 691 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 KIAA1522Q9P206 1035 aaPredicted RBP11.17□□□□□ -0.62
CPSF1-203ENST00000527916 TRAF3IP3Q9Y228 551 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 CFAP46Q8IYW2 2715 aa11.17□□□□□ -0.62
CPSF1-203ENST00000527916 PTPRBP23467 1997 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 IKBKBO14920 756 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 MAPK13O15264 365 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 CALUO43852 315 aaPredicted RBP11.16□□□□□ -0.62
CPSF1-203ENST00000527916 PHACTR2O75167 634 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 NDUFS2O75306 463 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 PDGFRBP09619 1106 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 ADH5P11766 374 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 GABRG2P18507 467 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 PPP3CCP48454 512 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 MYL6P60660 151 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 TNNC1P63316 161 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 SLC7A9P82251 487 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 KDSRQ06136 332 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 ENPEPQ07075 957 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 DPYDQ12882 1025 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 WDR45BQ5MNZ6 344 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 BTBD8Q5XKL5 378 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 SDE2Q6IQ49 451 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 KRBA2Q6ZNG9 492 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 DDX42Q86XP3 938 aaKnown RBP eCLIP11.16□□□□□ -0.62
CPSF1-203ENST00000527916 SFTPA1Q8IWL2 248 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 SCUBE3Q8IX30 993 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 GALNT15Q8N3T1 639 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 ZNF513Q8N8E2 541 aaPredicted RBP11.16□□□□□ -0.62
CPSF1-203ENST00000527916 OR6B3Q8NGW1 331 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 PLEKHO2Q8TD55 490 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 TMC2Q8TDI7 906 aa11.16□□□□□ -0.62
CPSF1-203ENST00000527916 SETD7Q8WTS6 366 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms