RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 SLITRK1Q96PX8 696 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 KCNK16Q96T55 309 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 VWA8A3KMH1 1905 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 GABBR2O75899 941 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 ECEL1O95672 775 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 CETN2P41208 172 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 MAGEA10P43363 369 aaPredicted RBP19.73■□□□□ 0.75
VPS28-207ENST00000526977 GLUD2P49448 558 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 PLTPP55058 493 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 UAP1Q16222 522 aaPredicted RBP19.73■□□□□ 0.75
VPS28-207ENST00000526977 PSMD5Q16401 504 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 CCNG2Q16589 344 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 FAM102AQ5T9C2 384 aaPredicted RBP19.73■□□□□ 0.75
VPS28-207ENST00000526977 PRSS55Q6UWB4 352 aaPredicted RBP19.73■□□□□ 0.75
VPS28-207ENST00000526977 MFSD7Q6UXD7 560 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 FAM183BPQ6ZVS7 135 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 FBXO22Q8NEZ5 403 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 ZMIZ2Q8NF64 920 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 RAPGEF5Q92565 580 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 FMO2Q99518 471 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 HOMER3Q9NSC5 361 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 RWDD3Q9Y3V2 267 aa19.73■□□□□ 0.75
VPS28-207ENST00000526977 PIK3R2O00459 728 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 PAPSS1O43252 624 aaPredicted RBP19.72■□□□□ 0.75
VPS28-207ENST00000526977 FGF18O76093 207 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 KRT1P04264 644 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 KRT10P13645 584 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 LCP1P13796 627 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 CPB1P15086 417 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 ADCY2Q08462 1091 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 ZFYVE27Q5T4F4 411 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 OLFML1Q6UWY5 402 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 TMC3Q7Z5M5 1100 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 TNS4Q8IZW8 715 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 SPPL2BQ8TCT7 592 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 TXLNGYQ9BZA5 131 aa19.72■□□□□ 0.75
VPS28-207ENST00000526977 DDX56Q9NY93 547 aaKnown RBP19.72■□□□□ 0.75
VPS28-207ENST00000526977 ABI2Q9NYB9 513 aaPredicted RBP19.72■□□□□ 0.75
VPS28-207ENST00000526977 LRCH4O75427 683 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 GRIK1P39086 918 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 MAGEA11P43364 429 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 CDR1P51861 262 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 CACNA2D1P54289 1103 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 COPS2P61201 443 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 DHX9Q08211 1270 aaKnown RBP19.71■□□□□ 0.75
VPS28-207ENST00000526977 RAB41Q5JT25 222 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 RSPO2Q6UXX9 243 aaPredicted RBP19.71■□□□□ 0.75
VPS28-207ENST00000526977 VPS52Q8N1B4 723 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 SIX6OS1Q8N1H7 587 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 ATL2Q8NHH9 583 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 FBXO25Q8TCJ0 367 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 RUFY1Q96T51 708 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 TMEM30AQ9NV96 361 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 FEZ2Q9UHY8 353 aaPredicted RBP19.71■□□□□ 0.75
VPS28-207ENST00000526977 SSX2IPQ9Y2D8 614 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 CDY1Q9Y6F8 540 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 FBXO21O94952 628 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 URODP06132 367 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 CYP2F1P24903 491 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 GBP1P32455 592 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 ARPP19P56211 112 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 SLC25A11Q02978 314 aaKnown RBP19.71■□□□□ 0.75
VPS28-207ENST00000526977 PPP1R7Q15435 360 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 SPOCD1Q6ZMY3 1216 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 ARCQ7LC44 396 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 POLNQ7Z5Q5 900 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 ARL8AQ96BM9 186 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 ACSF2Q96CM8 615 aaPredicted RBP19.71■□□□□ 0.75
VPS28-207ENST00000526977 RHOBTB2Q9BYZ6 727 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 PLAAQ9Y263 795 aa19.71■□□□□ 0.75
VPS28-207ENST00000526977 HHLA1C9JL84 531 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 GOLGA8KD6RF30 607 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 H0YGN5 161 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 PPFIA2O75334 1257 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 KRT14P02533 472 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 IL1R2P27930 398 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 BMPR1AP36894 532 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 TKTL1P51854 596 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 ADIGQ0VDE8 80 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 EFHC1Q5JVL4 640 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 C9orf50Q5SZB4 431 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 KAZNQ674X7 775 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 SLC26A9Q7LBE3 791 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 GOLGA6L1Q8N7Z2 621 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 FAM118BQ9BPY3 351 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 FAM204AQ9H8W3 233 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 CNGB3Q9NQW8 809 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 MRPL17Q9NRX2 175 aaKnown RBP19.7■□□□□ 0.74
VPS28-207ENST00000526977 NFS1Q9Y697 457 aa19.7■□□□□ 0.74
VPS28-207ENST00000526977 C2CD2LO14523 706 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 TRIM66O15016 1216 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 PTPN7P35236 360 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 CDKN2BP42772 138 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 MRPS5P82675 430 aaKnown RBP19.69■□□□□ 0.74
VPS28-207ENST00000526977 CREMQ03060 361 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 ACAP1Q15027 740 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 SYDE1Q6ZW31 735 aaPredicted RBP19.69■□□□□ 0.74
VPS28-207ENST00000526977 KLHL23Q8NBE8 558 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 ART4Q93070 314 aa19.69■□□□□ 0.74
VPS28-207ENST00000526977 EXOC4Q96A65 974 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms