RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 CABIN1Q9Y6J0 2220 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 ADAMTS20P59510 1910 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 UPK3BL1B0FP48 263 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 WASH3PC4AMC7 463 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 UPK3BL2E5RIL1 263 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 MDM4O15151 490 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 KLRC4O43908 158 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 ALDH1A2O94788 518 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 TUBP50607 506 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 TNNC1P63316 161 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 CUL4BQ13620 913 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 COL9A2Q14055 689 aaPredicted RBP15.12■□□□□ 0.01
CPSF1-201ENST00000526271 C10orf76Q5T2E6 689 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 SPOPLQ6IQ16 392 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 UNC13DQ70J99 1090 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 ACOT1Q86TX2 421 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 C12orf29Q8N999 325 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 CSNK1G1Q9HCP0 422 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 POLMQ9NP87 494 aaPredicted RBP15.12■□□□□ 0.01
CPSF1-201ENST00000526271 SLC39A2Q9NP94 309 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 KRT82Q9NSB4 513 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 BCCIPQ9P287 314 aaKnown RBP eCLIP15.12■□□□□ 0.01
CPSF1-201ENST00000526271 TBC1D14Q9P2M4 693 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 CIZ1Q9ULV3 898 aaPredicted RBP15.12■□□□□ 0.01
CPSF1-201ENST00000526271 ACACAQ13085 2346 aa15.12■□□□□ 0.01
CPSF1-201ENST00000526271 FAM221BA6H8Z2 402 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 TBC1D3BA6NDS4 549 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 SPTLC2O15270 562 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 CACNG3O60359 315 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 RTN3O95197 1032 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-201ENST00000526271 HOXB2P14652 356 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 PDCP20941 246 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 RPL6Q02878 288 aaKnown RBP15.11■□□□□ 0.01
CPSF1-201ENST00000526271 ZNF33AQ06730 810 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 LMAN2Q12907 356 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 SPDYCQ5MJ68 293 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 Q6ZNB5 142 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 HTR3DQ70Z44 454 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 DDX42Q86XP3 938 aaKnown RBP eCLIP15.11■□□□□ 0.01
CPSF1-201ENST00000526271 KIAA0895Q8NCT3 520 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 IPO4Q8TEX9 1081 aaKnown RBP15.11■□□□□ 0.01
CPSF1-201ENST00000526271 OTUB2Q96DC9 234 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 GABRG3Q99928 467 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 DMAP1Q9NPF5 467 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-201ENST00000526271 DEC1Q9P2X7 70 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 NUDT5Q9UKK9 219 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 SLC6A14Q9UN76 642 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 MSRB2Q9Y3D2 182 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 NEUROG3Q9Y4Z2 214 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 UBE4BO95155 1302 aa15.11■□□□□ 0.01
CPSF1-201ENST00000526271 MUC22E2RYF6 1773 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-201ENST00000526271 K7ELQ4 463 aaPredicted RBP15.1■□□□□ 0.01
CPSF1-201ENST00000526271 TLR5O60602 858 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 PPP6R2O75170 966 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 AP1G2O75843 785 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 KLKB1P03952 638 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 CFIP05156 583 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 SERPINF2P08697 491 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 NTSR1P30989 418 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 ATICP31939 592 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 ASPAP45381 313 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 SIM1P81133 766 aaPredicted RBP15.1■□□□□ 0.01
CPSF1-201ENST00000526271 RING1Q06587 406 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 STK4Q13043 487 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 ANO4Q32M45 955 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 SCD5Q86SK9 330 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 CHCHD4Q8N4Q1 142 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 PDZD8Q8NEN9 1154 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 SLC2A14Q8TDB8 520 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 ZCCHC14Q8WYQ9 949 aaKnown RBP15.1■□□□□ 0.01
CPSF1-201ENST00000526271 SMARCD1Q96GM5 515 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 SPACA7Q96KW9 195 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 NUSAP1Q9BXS6 441 aaKnown RBP15.1■□□□□ 0.01
CPSF1-201ENST00000526271 CYLDQ9NQC7 956 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 CACNA2D2Q9NY47 1150 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 EHD2Q9NZN4 543 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 MARK1Q9P0L2 795 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 FBXO10Q9UK96 956 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 CLEC4EQ9ULY5 219 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 CYP8B1Q9UNU6 501 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 SLCO1B1Q9Y6L6 691 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 BPTFQ12830 3046 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 TMEM131Q92545 1883 aa15.1■□□□□ 0.01
CPSF1-201ENST00000526271 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-201ENST00000526271 CYP26A1O43174 497 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 MAP3K13O43283 966 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 STX6O43752 255 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 TYRP14679 529 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 MAOBP27338 520 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 NDST1P52848 882 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 MAP3K7CLP57077 242 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 BNC1Q01954 994 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 NCOA4Q13772 614 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 STK38Q15208 465 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 DUOXA1Q1HG43 343 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 ZNF699Q32M78 642 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 CLEC20AQ6ZU45 233 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 RAB44Q7Z6P3 723 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-201ENST00000526271 CRYBG2Q8N1P7 616 aa15.09■□□□□ 0.01
CPSF1-201ENST00000526271 PGBD3Q8N328 593 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms