RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 HSD3B7Q9H2F3 369 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 ECT2Q9H8V3 914 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 UBE2TQ9NPD8 197 aaPredicted RBP10.71□□□□□ -0.69
VPS28-204ENST00000526054 DUS2Q9NX74 493 aaKnown RBP10.71□□□□□ -0.69
VPS28-204ENST00000526054 APEX2Q9UBZ4 518 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 PCDHB4Q9Y5E5 795 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 WNT6Q9Y6F9 365 aa10.71□□□□□ -0.69
VPS28-204ENST00000526054 C2orf78A6NCI8 922 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 GDF9O60383 454 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 EPN2O95208 641 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 ADRB1P08588 477 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 ATP1A3P13637 1013 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 CCDC130P13994 396 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 KCNA4P22459 653 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 GRIK1P39086 918 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 PDE6CP51160 858 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 RAD23BP54727 409 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 NAIF1Q69YI7 327 aaPredicted RBP10.7□□□□□ -0.7
VPS28-204ENST00000526054 SMYD5Q6GMV2 418 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 TMEM270Q6UE05 265 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 CACNA2D4Q7Z3S7 1137 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 LUZP1Q86V48 1076 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 KBTBD6Q86V97 674 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 UBR7Q8N806 425 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 ARL14EPQ8N8R7 260 aaPredicted RBP10.7□□□□□ -0.7
VPS28-204ENST00000526054 SLC4A11Q8NBS3 891 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 RPLP0P6Q8NHW5 317 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 SLC2A14Q8TDB8 520 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 SH3RF2Q8TEC5 729 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 WHAMMQ8TF30 809 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 KAT5Q92993 513 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 CD101Q93033 1021 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 ACDQ96AP0 544 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 LOXL4Q96JB6 756 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 HEXIM2Q96MH2 286 aaKnown RBP10.7□□□□□ -0.7
VPS28-204ENST00000526054 CYP2S1Q96SQ9 504 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 LSM14BQ9BX40 385 aaKnown RBP10.7□□□□□ -0.7
VPS28-204ENST00000526054 B3GNT5Q9BYG0 378 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 ZNF518BQ9C0D4 1074 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 ARRDC1-AS1Q9H2J1 176 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 FBRSL1Q9HCM7 1045 aaKnown RBP10.7□□□□□ -0.7
VPS28-204ENST00000526054 DMAP1Q9NPF5 467 aaPredicted RBP10.7□□□□□ -0.7
VPS28-204ENST00000526054 KRT82Q9NSB4 513 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 FAM49BQ9NUQ9 324 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 EHD2Q9NZN4 543 aa10.7□□□□□ -0.7
VPS28-204ENST00000526054 MAP1BP46821 2468 aaKnown RBP10.69□□□□□ -0.7
VPS28-204ENST00000526054 CNOT1A5YKK6 2376 aaKnown RBP10.69□□□□□ -0.7
VPS28-204ENST00000526054 LRRC10BA6NIK2 292 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 F8VP50 259 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 CLDN5O00501 218 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 AXIN1O15169 862 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 AP1G2O75843 785 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 SERPINC1P01008 464 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 PAEPP09466 180 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 FAM200BP0CF97 657 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 KRT5P13647 590 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 CD19P15391 556 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 ACO1P21399 889 aaKnown RBP10.69□□□□□ -0.7
VPS28-204ENST00000526054 ADORA2BP29275 332 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 GALK1P51570 392 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 ZNF445P59923 1031 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 UBXN1Q04323 297 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 SF3A2Q15428 464 aaKnown RBP10.69□□□□□ -0.7
VPS28-204ENST00000526054 CCDC6Q16204 474 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 ARHGAP44Q17R89 818 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 EML3Q32P44 896 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 SGO2Q562F6 1265 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 IL31Q6EBC2 164 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 DENND5BQ6ZUT9 1274 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 FUKQ8N0W3 1084 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 CAMKK1Q8N5S9 505 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 C12orf29Q8N999 325 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 RBBP8NLQ8NC74 664 aaPredicted RBP10.69□□□□□ -0.7
VPS28-204ENST00000526054 DDX1Q92499 740 aaKnown RBP10.69□□□□□ -0.7
VPS28-204ENST00000526054 CYFIP2Q96F07 1278 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 SPATA17Q96L03 361 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 C8orf48Q96LL4 319 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 PCMTD1Q96MG8 357 aaPredicted RBP10.69□□□□□ -0.7
VPS28-204ENST00000526054 KREMEN1Q96MU8 473 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 HNRNPABQ99729 332 aaKnown RBP10.69□□□□□ -0.7
VPS28-204ENST00000526054 SIX2Q9NPC8 291 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 POLR3BQ9NW08 1133 aaPredicted RBP10.69□□□□□ -0.7
VPS28-204ENST00000526054 DNAJC12Q9UKB3 198 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 KIAA1257Q9ULG3 409 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 ARHGAP26Q9UNA1 814 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 DAAM1Q9Y4D1 1078 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 ACACBO00763 2458 aa10.69□□□□□ -0.7
VPS28-204ENST00000526054 NFATC1O95644 943 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 APBB3O95704 486 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 ZNF806P0C7X5 589 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 VDRP11473 427 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 TCF3P15923 654 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 HDCP19113 662 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 MPLP40238 635 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 LIMK1P53667 647 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 SLC8A3P57103 927 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 KCNMA1Q12791 1236 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 NR1H3Q13133 447 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 RAPGEF1Q13905 1077 aa10.68□□□□□ -0.7
VPS28-204ENST00000526054 DMC1Q14565 340 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms