RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 GATMP50440 423 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 ELF3P78545 371 aaPredicted RBP5.31□□□□□ -1.56
CD44-218ENST00000525469 SPAG1Q07617 926 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 IFT88Q13099 833 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 TBX2Q13207 712 aaPredicted RBP5.31□□□□□ -1.56
CD44-218ENST00000525469 MYBPC3Q14896 1274 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 UBE3CQ15386 1083 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 TAF11Q15544 211 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 NDUFA5Q16718 116 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 HSDL1Q3SXM5 330 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 FBXO47Q5MNV8 452 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 THEMIS2Q5TEJ8 643 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 SFMBT2Q5VUG0 894 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 SLC6A19Q695T7 634 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 LAIR1Q6GTX8 287 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 LETMD1Q6P1Q0 360 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 SLC23A3Q6PIS1 610 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 DCLRE1AQ6PJP8 1040 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 TMC5Q6UXY8 1006 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 PRR23BQ6ZRT6 265 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 UNC13DQ70J99 1090 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 ZNF572Q7Z3I7 529 aaPredicted RBP5.31□□□□□ -1.56
CD44-218ENST00000525469 CATIPQ7Z7H3 387 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 PHLDB2Q86SQ0 1253 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 MCF2L2Q86YR7 1114 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 PASD1Q8IV76 773 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 CROCCP3Q8IVE0 287 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 MRPL41Q8IXM3 137 aaKnown RBP5.31□□□□□ -1.56
CD44-218ENST00000525469 PEX5LQ8IYB4 626 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 MMGT1Q8N4V1 131 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 RNF10Q8N5U6 811 aaKnown RBP5.31□□□□□ -1.56
CD44-218ENST00000525469 CCDC197Q8NCU1 140 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 PJA1Q8NG27 643 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 SSH3Q8TE77 659 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 USP33Q8TEY7 942 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 AENQ8WTP8 325 aaKnown RBP5.31□□□□□ -1.56
CD44-218ENST00000525469 GLG1Q92896 1179 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 LRRC45Q96CN5 670 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 CDK5RAP3Q96JB5 506 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 HEXIM2Q96MH2 286 aaKnown RBP5.31□□□□□ -1.56
CD44-218ENST00000525469 CATSPER2Q96P56 530 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 TAAR1Q96RJ0 339 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 PNKPQ96T60 521 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 SH3GL1Q99961 368 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 ARPC5LQ9BPX5 153 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 C16orf70Q9BSU1 422 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 KRT23Q9C075 422 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 TGIF2Q9GZN2 237 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 BRD8Q9H0E9 1235 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 PARVBQ9HBI1 364 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 PARD6AQ9NPB6 346 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 ARHGEF3Q9NR81 526 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 HELLSQ9NRZ9 838 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 TYW1Q9NV66 732 aaKnown RBP5.31□□□□□ -1.56
CD44-218ENST00000525469 PAG1Q9NWQ8 432 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 RMND1Q9NWS8 449 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 BAIAP2L1Q9UHR4 511 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 SATB2Q9UPW6 733 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 SSX2IPQ9Y2D8 614 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 ZNF510Q9Y2H8 683 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 TMEM98Q9Y2Y6 226 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 PCDHB5Q9Y5E4 795 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 CDY2AQ9Y6F7 541 aa5.31□□□□□ -1.56
CD44-218ENST00000525469 FLNBO75369 2602 aaKnown RBP5.3□□□□□ -1.56
CD44-218ENST00000525469 PLIN4Q96Q06 1357 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 FRMPD2Q68DX3 1309 aaPredicted RBP5.3□□□□□ -1.56
CD44-218ENST00000525469 WDR19Q8NEZ3 1342 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 NRCAMQ92823 1304 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 ZFYVE26Q68DK2 2539 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 SHROOM3Q8TF72 1996 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 DENND3A2RUS2 1198 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 EME2A4GXA9 379 aaPredicted RBP5.3□□□□□ -1.56
CD44-218ENST00000525469 E7EVH7 732 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 O00370 1275 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 N4BP3O15049 544 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 NCAM2O15394 837 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 TTI1O43156 1089 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 N4BP1O75113 896 aaKnown RBP5.3□□□□□ -1.56
CD44-218ENST00000525469 ATP6V1G1O75348 118 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 TPPPO94811 219 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 ZNF202O95125 648 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 CXCL14O95715 111 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 FAM163BP0C2L3 166 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 RHOXF2BP0C7M4 288 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 TGFB3P10600 412 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 CD8BP10966 210 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 ITGB5P18084 799 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 GNAT2P19087 354 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 POLR2EP19388 210 aaKnown RBP5.3□□□□□ -1.56
CD44-218ENST00000525469 ATP6V1C1P21283 382 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 TGM1P22735 817 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 PAX3P23760 479 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 HOXC8P31273 242 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 STIP1P31948 543 aaKnown RBP5.3□□□□□ -1.56
CD44-218ENST00000525469 PCK1P35558 622 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 FLT3P36888 993 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 SARSP49591 514 aaKnown RBP5.3□□□□□ -1.56
CD44-218ENST00000525469 GNAQP50148 359 aa5.3□□□□□ -1.56
CD44-218ENST00000525469 YARSP54577 528 aaKnown RBP5.3□□□□□ -1.56
CD44-218ENST00000525469 EIF3BP55884 814 aaKnown RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms