RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 UBA3Q8TBC4 463 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 NDRG1Q92597 394 aaKnown RBP9.84□□□□□ -0.83
HDAC3-215ENST00000519474 OTUB2Q96DC9 234 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 NT5C1BQ96P26 610 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 DNAI2Q9GZS0 605 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 EPC1Q9H2F5 836 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 SPHK2Q9NRA0 654 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 LMBRD1Q9NUN5 540 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 RWDD2AQ9UIY3 292 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 MYH10P35580 1976 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 FGFR1OPO95684 399 aaKnown RBP9.83□□□□□ -0.84
HDAC3-215ENST00000519474 CALCAP01258 141 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 KLKB1P03952 638 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 PAEPP09466 180 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 TGM1P22735 817 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 TBXAS1P24557 533 aaPredicted RBP9.83□□□□□ -0.84
HDAC3-215ENST00000519474 PXNP49023 591 aaPredicted RBP9.83□□□□□ -0.84
HDAC3-215ENST00000519474 PSEN1P49768 467 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 YWHAEP62258 255 aaKnown RBP9.83□□□□□ -0.84
HDAC3-215ENST00000519474 GAD2Q05329 585 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 SRSF5Q13243 272 aaKnown RBP9.83□□□□□ -0.84
HDAC3-215ENST00000519474 TMEM270Q6UE05 265 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 LCLAT1Q6UWP7 414 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 BHLHA9Q7RTU4 235 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 WDR5BQ86VZ2 330 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 CAMKK1Q8N5S9 505 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 NAT16Q8N8M0 369 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 RPLP0P6Q8NHW5 317 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 USP33Q8TEY7 942 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 SLC35F5Q8WV83 523 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 RUBCNQ92622 972 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 EXOC4Q96A65 974 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 KREMEN1Q96MU8 473 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 PNKPQ96T60 521 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 CLIC5Q9NZA1 410 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 DNMT3LQ9UJW3 386 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 NAGPAQ9UK23 515 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 TSPAN16Q9UKR8 245 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 SH3BP1Q9Y3L3 701 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 PCDHB4Q9Y5E5 795 aa9.83□□□□□ -0.84
HDAC3-215ENST00000519474 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.83□□□□□ -0.84
HDAC3-215ENST00000519474 CCDC163A0A0D9SF12 145 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 O00370 1275 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 XPO1O14980 1071 aaKnown RBP9.82□□□□□ -0.84
HDAC3-215ENST00000519474 STC2O76061 302 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 ZBED1O96006 694 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 AFPP02771 609 aaKnown RBP9.82□□□□□ -0.84
HDAC3-215ENST00000519474 CCDC192P0DO97 292 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 IRF1P10914 325 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 CD19P15391 556 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 CNR2P34972 360 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 EIF2DP41214 584 aaKnown RBP9.82□□□□□ -0.84
HDAC3-215ENST00000519474 TKTL1P51854 596 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 CETN1Q12798 172 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 GOLGA7BQ2TAP0 167 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 C10orf120Q5SQS8 335 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 Q6ZNB5 142 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 SYT13Q7L8C5 426 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 ETFBKMTQ8IXQ9 262 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 PPM1KQ8N3J5 372 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 PHTF2Q8N3S3 785 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 MLKLQ8NB16 471 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 KCTD13Q8WZ19 329 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 P2RY11Q96G91 374 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 ULBP1Q9BZM6 244 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 NACA2Q9H009 215 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 CLSTN2Q9H4D0 955 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 UBE2TQ9NPD8 197 aaPredicted RBP9.82□□□□□ -0.84
HDAC3-215ENST00000519474 HCN2Q9UL51 889 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 SLC8A2Q9UPR5 921 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 CNTN6Q9UQ52 1028 aa9.82□□□□□ -0.84
HDAC3-215ENST00000519474 TRIM24O15164 1050 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 HOXC11O43248 304 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-215ENST00000519474 KAT7O95251 611 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 CISD3P0C7P0 127 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 RALAP11233 206 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 ADH5P11766 374 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 SLC9A1P19634 815 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 GRIA2P42262 883 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 TNFRSF4P43489 277 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 KIR2DL1P43626 348 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-215ENST00000519474 ZNF132P52740 706 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 BCAT1P54687 386 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 YWHAGP61981 247 aaKnown RBP eCLIP9.81□□□□□ -0.84
HDAC3-215ENST00000519474 MRPS21P82921 87 aaKnown RBP9.81□□□□□ -0.84
HDAC3-215ENST00000519474 COG7P83436 770 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 GCNT1Q02742 428 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 BST2Q10589 180 aaKnown RBP9.81□□□□□ -0.84
HDAC3-215ENST00000519474 SIM2Q14190 667 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-215ENST00000519474 DMC1Q14565 340 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 LPAL2Q16609 132 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 C2orf27AQ580R0 203 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 PMF1Q6P1K2 205 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 TPGS1Q6ZTW0 290 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 CREBRFQ8IUR6 639 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 KIAA2013Q8IYS2 634 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 CCDC33Q8N5R6 958 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 INTS2Q9H0H0 1204 aaKnown RBP9.81□□□□□ -0.84
HDAC3-215ENST00000519474 HESX1Q9UBX0 185 aa9.81□□□□□ -0.84
HDAC3-215ENST00000519474 FBXO10Q9UK96 956 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms