RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 GBP4Q96PP9 640 aa12.09□□□□□ -0.47
VCAN-212ENST00000515397 PRMT8Q9NR22 394 aaPredicted RBP12.09□□□□□ -0.47
VCAN-212ENST00000515397 HESX1Q9UBX0 185 aa12.09□□□□□ -0.47
VCAN-212ENST00000515397 RASAL2Q9UJF2 1139 aa12.09□□□□□ -0.47
VCAN-212ENST00000515397 FBXO4Q9UKT5 387 aa12.09□□□□□ -0.47
VCAN-212ENST00000515397 GVINP1Q7Z2Y8 2422 aa12.09□□□□□ -0.47
VCAN-212ENST00000515397 E2F8A0AVK6 867 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 XPO1O14980 1071 aaKnown RBP12.08□□□□□ -0.48
VCAN-212ENST00000515397 ZBED1O96006 694 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 PNMA6AP0CW24 399 aaPredicted RBP12.08□□□□□ -0.48
VCAN-212ENST00000515397 TDGF1P13385 188 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 CCR3P51677 355 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 KDSRQ06136 332 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 ADIGQ0VDE8 80 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 BST2Q10589 180 aaKnown RBP12.08□□□□□ -0.48
VCAN-212ENST00000515397 CNGA2Q16280 664 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 ANO4Q32M45 955 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 C2orf27AQ580R0 203 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 RAB41Q5JT25 222 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 EMC10Q5UCC4 262 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 LCLAT1Q6UWP7 414 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 TPGS1Q6ZTW0 290 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 SECISBP2LQ93073 1101 aaKnown RBP12.08□□□□□ -0.48
VCAN-212ENST00000515397 ERLEC1Q96DZ1 483 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 P2RY11Q96G91 374 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 LRRC4Q9HBW1 653 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 PNPLA8Q9NP80 782 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 CYLDQ9NQC7 956 aa12.08□□□□□ -0.48
VCAN-212ENST00000515397 AJAP1Q9UKB5 411 aaPredicted RBP12.08□□□□□ -0.48
VCAN-212ENST00000515397 YJEFN3A6XGL0 299 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 E7ENQ6 273 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 K7EQS6 105 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 K7ESF4 209 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 M0QYV0 167 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 PES1O00541 588 aaKnown RBP12.07□□□□□ -0.48
VCAN-212ENST00000515397 SLC9A3R1O14745 358 aaPredicted RBP12.07□□□□□ -0.48
VCAN-212ENST00000515397 LETM1O95202 739 aaPredicted RBP12.07□□□□□ -0.48
VCAN-212ENST00000515397 LMNAP02545 664 aaKnown RBP12.07□□□□□ -0.48
VCAN-212ENST00000515397 KLKB1P03952 638 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 PAEPP09466 180 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 RALAP11233 206 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 ADH5P11766 374 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 PRKCSHP14314 528 aaPredicted RBP12.07□□□□□ -0.48
VCAN-212ENST00000515397 PON1P27169 355 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 TUBP50607 506 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 ZNF132P52740 706 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 BCAT1P54687 386 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 SLC8A3P57103 927 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 YWHAGP61981 247 aaKnown RBP eCLIP12.07□□□□□ -0.48
VCAN-212ENST00000515397 AMPD2Q01433 879 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 GCNT1Q02742 428 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 EXOC3L4Q17RC7 722 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 PKDCCQ504Y2 493 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 DENND1BQ6P3S1 775 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 C1orf228Q6PIY5 440 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 GBP6Q6ZN66 633 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 RSRC2Q7L4I2 434 aaKnown RBP12.07□□□□□ -0.48
VCAN-212ENST00000515397 BHLHA9Q7RTU4 235 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 DDX42Q86XP3 938 aaKnown RBP eCLIP12.07□□□□□ -0.48
VCAN-212ENST00000515397 CCDC33Q8N5R6 958 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 RPLP0P6Q8NHW5 317 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 CLEC4CQ8WTT0 213 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 UBXN6Q9BZV1 441 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 MIS12Q9H081 205 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 ZSCAN32Q9NX65 697 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 PLK2Q9NYY3 685 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 SFMBT1Q9UHJ3 866 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 DNMT3LQ9UJW3 386 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 KIAA1257Q9ULG3 409 aa12.07□□□□□ -0.48
VCAN-212ENST00000515397 SLC12A8A0AV02 714 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 BECN2A8MW95 431 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 HRO43593 1189 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 STC2O76061 302 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 DRD1P21728 446 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 ERCC5P28715 1186 aaPredicted RBP12.06□□□□□ -0.48
VCAN-212ENST00000515397 PLA2G4AP47712 749 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 ZNF528Q3MIS6 628 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 MIIPQ5JXC2 388 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 BSPRYQ5W0U4 402 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 PM20D1Q6GTS8 502 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 TRIM65Q6PJ69 517 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 C11orf57Q6ZUT1 292 aaPredicted RBP12.06□□□□□ -0.48
VCAN-212ENST00000515397 HTR3DQ70Z44 454 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 SIX6OS1Q8N1H7 587 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 SUMF1Q8NBK3 374 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 ZBTB44Q8NCP5 570 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 SLC35F5Q8WV83 523 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 HHIPQ96QV1 700 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 HINFPQ9BQA5 517 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 TUBGCP2Q9BSJ2 902 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 THAP9Q9H5L6 903 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 FAM124BQ9H5Z6 455 aaPredicted RBP12.06□□□□□ -0.48
VCAN-212ENST00000515397 SIX2Q9NPC8 291 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 SPHK2Q9NRA0 654 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 TAB2Q9NYJ8 693 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 TBC1D14Q9P2M4 693 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.06□□□□□ -0.48
VCAN-212ENST00000515397 OTOGLQ3ZCN5 2332 aa12.06□□□□□ -0.48
VCAN-212ENST00000515397 KCNJ18B7U540 433 aa12.05□□□□□ -0.48
VCAN-212ENST00000515397 NEDD8-MDP1E9PL57 170 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms