RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 SLC46A1Q96NT5 459 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 STRBPQ96SI9 672 aaKnown RBP4.52□□□□□ -1.69
NUP54-212ENST00000513248 INO80BQ9C086 356 aaPredicted RBP4.52□□□□□ -1.69
NUP54-212ENST00000513248 ZNF700Q9H0M5 742 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 KIAA1586Q9HCI6 787 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 AFF4Q9UHB7 1163 aaKnown RBP4.52□□□□□ -1.69
NUP54-212ENST00000513248 NUDCQ9Y266 331 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 RAD54BQ9Y620 910 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 PEAK1Q9H792 1746 aa4.52□□□□□ -1.69
NUP54-212ENST00000513248 MYOM1P52179 1685 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 NHSQ6T4R5 1651 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 WNK3Q9BYP7 1800 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 TMEM233B4DJY2 109 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 FOXN3O00409 490 aaPredicted RBP4.51□□□□□ -1.69
NUP54-212ENST00000513248 KIAA0355O15063 1070 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 MGEA5O60502 916 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 VPS4BO75351 444 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 MYL1P05976 194 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 ATXN1LP0C7T5 689 aaKnown RBP4.51□□□□□ -1.69
NUP54-212ENST00000513248 NPTX2P47972 431 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 NDUFV1P49821 464 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 MRPS35P82673 323 aaKnown RBP4.51□□□□□ -1.69
NUP54-212ENST00000513248 IQCB1Q15051 598 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 NPY5RQ15761 445 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 PRR16Q569H4 304 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 C3orf38Q5JPI3 329 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 DCAF12L1Q5VU92 463 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 LMBRD2Q68DH5 695 aaPredicted RBP4.51□□□□□ -1.69
NUP54-212ENST00000513248 C11orf96Q7Z7L8 435 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 SLC15A4Q8N697 577 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 PCSK9Q8NBP7 692 aaKnown RBP4.51□□□□□ -1.69
NUP54-212ENST00000513248 SVIPQ8NHG7 77 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 ACTRT2Q8TDY3 377 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 PIGBQ92521 554 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 LPIN2Q92539 896 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 SNX19Q92543 992 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 COLEC11Q9BWP8 271 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 UNKQ9C0B0 810 aaKnown RBP4.51□□□□□ -1.69
NUP54-212ENST00000513248 A1CFQ9NQ94 594 aaKnown RBP4.51□□□□□ -1.69
NUP54-212ENST00000513248 LRIT1Q9P2V4 623 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 CAPN11Q9UMQ6 739 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 SSX2IPQ9Y2D8 614 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 TMX2Q9Y320 296 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 COX11Q9Y6N1 276 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 NUP188Q5SRE5 1749 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 RREB1Q92766 1687 aa4.51□□□□□ -1.69
NUP54-212ENST00000513248 LRP5O75197 1615 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 IGSF1Q8N6C5 1336 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 SALL3Q9BXA9 1300 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 A0A0B4J269 797 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 ERVV-2B6SEH9 535 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 PYCARD-AS1I3L0S3 204 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 PEX1O43933 1283 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 TBC1D4O60343 1298 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 KRT18P05783 430 aaKnown RBP4.5□□□□□ -1.69
NUP54-212ENST00000513248 XRCC6P12956 609 aaKnown RBP eCLIP4.5□□□□□ -1.69
NUP54-212ENST00000513248 BRAFP15056 766 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 CHRM3P20309 590 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 PPIFP30405 207 aaKnown RBP4.5□□□□□ -1.69
NUP54-212ENST00000513248 CLK3P49761 638 aaKnown RBP4.5□□□□□ -1.69
NUP54-212ENST00000513248 LOXL3P58215 753 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 RPS16P62249 146 aaKnown RBP4.5□□□□□ -1.69
NUP54-212ENST00000513248 TEFQ10587 303 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 TUBB3Q13509 450 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 RAB32Q13637 225 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 ZNF169Q14929 603 aaPredicted RBP4.5□□□□□ -1.69
NUP54-212ENST00000513248 PTPRRQ15256 657 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 VPS53Q5VIR6 699 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 ZDHHC24Q6UX98 284 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 ZNF280BQ86YH2 543 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 TTC5Q8N0Z6 440 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.5□□□□□ -1.69
NUP54-212ENST00000513248 SLC30A5Q8TAD4 765 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 MOGAT1Q96PD6 335 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 NELL2Q99435 816 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 GDF15Q99988 308 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 PTDSS2Q9BVG9 487 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 APOL5Q9BWW9 433 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 CHST8Q9H2A9 424 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 ZNF287Q9HBT7 754 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 ASAP1Q9ULH1 1129 aa4.5□□□□□ -1.69
NUP54-212ENST00000513248 CCDC194A0A1B0GVG4 234 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 VWC2LB2RUY7 222 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 PQBP1O60828 265 aaKnown RBP4.49□□□□□ -1.69
NUP54-212ENST00000513248 CSF1RP07333 972 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 TXNP10599 105 aaKnown RBP4.49□□□□□ -1.69
NUP54-212ENST00000513248 PPP3CBP16298 524 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 TSHRP16473 764 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 KCNA3P22001 575 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 KLRC1P26715 233 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 RFC4P35249 363 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 FOLR3P41439 243 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 PRIM2P49643 509 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 DGKEP52429 567 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 SIM1P81133 766 aaPredicted RBP4.49□□□□□ -1.69
NUP54-212ENST00000513248 DAG1Q14118 895 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 RBM20Q5T481 1227 aaKnown RBP4.49□□□□□ -1.69
NUP54-212ENST00000513248 FCRL6Q6DN72 434 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 TMEM108Q6UXF1 575 aa4.49□□□□□ -1.69
NUP54-212ENST00000513248 DTX2Q86UW9 622 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms