RNA–Protein interactions for RNA: ENST00000504807.5

DDX41-204, Transcript of DEAD-box helicase 41, human

TSL 2

Gene DDX41, Length 794 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-204	ENST00000504807	ARID3A	Q99856	593 aa		13.92	□□□□□ -0.18
DDX41-204	ENST00000504807	MED10	Q9BTT4	135 aa		13.92	□□□□□ -0.18
DDX41-204	ENST00000504807	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX41-204	ENST00000504807	DUSP15	Q9H1R2	295 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX41-204	ENST00000504807	CSNK1G1	Q9HCP0	422 aa		13.92	□□□□□ -0.18
DDX41-204	ENST00000504807	ZDHHC4	Q9NPG8	344 aa		13.92	□□□□□ -0.18
DDX41-204	ENST00000504807	ATG2B	Q96BY7	2078 aa		13.92	□□□□□ -0.18
DDX41-204	ENST00000504807	BCLAF3	A2AJT9	711 aa	Known RBP	13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	CDX4	O14627	284 aa	Predicted RBP	13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	IKBKB	O14920	756 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	TRIM24	O15164	1050 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	MAPK13	O15264	365 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	CLSTN1	O94985	981 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	TBX18	O95935	607 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	PRCP	P42785	496 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	SEC13	P55735	322 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	SIM1	P81133	766 aa	Predicted RBP	13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	C19orf57	Q0VDD7	668 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	SCAP	Q12770	1279 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	ELF2	Q15723	593 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	SNX30	Q5VWJ9	437 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	CLEC20A	Q6ZU45	233 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	CHCHD4	Q8N4Q1	142 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	JAKMIP2	Q96AA8	810 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	SMARCD1	Q96GM5	515 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	NMUR1	Q9HB89	426 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	DMAP1	Q9NPF5	467 aa	Predicted RBP	13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	CACNA2D2	Q9NY47	1150 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	HCN2	Q9UL51	889 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	FRMD4B	Q9Y2L6	1034 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	CACNA1E	Q15878	2313 aa		13.91	□□□□□ -0.18
DDX41-204	ENST00000504807	SPAG17	Q6Q759	2223 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	HECTD1	Q9ULT8	2610 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	TRIM49B	A6NDI0	452 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	PATE3	B3GLJ2	98 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	KHNYN	O15037	678 aa	Known RBP	13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	MDM4	O15151	490 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	CYP26A1	O43174	497 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	CILP	O75339	1184 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	MBL2	P11226	248 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	CD58	P19256	250 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	DRD1	P21728	446 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	ADAM9	Q13443	819 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	DHCR24	Q15392	516 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	CBWD6	Q4V339	395 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	CBWD3	Q5JTY5	395 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	CBWD5	Q5RIA9	395 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	EMC10	Q5UCC4	262 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	BBS7	Q8IWZ6	715 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	PHTF2	Q8N3S3	785 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	TAF4B	Q92750	862 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	TATDN2	Q93075	761 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	TNIP3	Q96KP6	325 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	SLITRK1	Q96PX8	696 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	SLC32A1	Q9H598	525 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	SLC8A2	Q9UPR5	921 aa		13.9	□□□□□ -0.18
DDX41-204	ENST00000504807	CCDC163	A0A0D9SF12	145 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	RHOBTB1	O94844	696 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	CD44	P16070	742 aa	Known RBP	13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	PFKL	P17858	780 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	BMP6	P22004	513 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	PSMC2	P35998	433 aa	Known RBP	13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	DMC1	Q14565	340 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	ZNF394	Q53GI3	561 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	ANKRD40	Q6AI12	368 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	INTS8	Q75QN2	995 aa	Known RBP	13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	SCD5	Q86SK9	330 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	UNC93A	Q86WB7	457 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	ZC3H3	Q8IXZ2	948 aa	Known RBP	13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	SPATA20	Q8TB22	786 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	USP33	Q8TEY7	942 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	NIF3L1	Q9GZT8	377 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	NUDT5	Q9UKK9	219 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	INVS	Q9Y283	1065 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	PCDHA5	Q9Y5H7	936 aa		13.89	□□□□□ -0.19
DDX41-204	ENST00000504807	RTN3	O95197	1032 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	NFATC1	O95644	943 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	IRF1	P10914	325 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	GBP1	P32455	592 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	PPP3CC	P48454	512 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	KDSR	Q06136	332 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	EDRF1	Q3B7T1	1238 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	C2orf27A	Q580R0	203 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	LY6G5C	Q5SRR4	150 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	HECTD3	Q5T447	861 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	ISM2	Q6H9L7	571 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	TMEM92	Q6UXU6	159 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	CCDC33	Q8N5R6	958 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	OVCA2	Q8WZ82	227 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	CYFIP2	Q96F07	1278 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	HNRNPAB	Q99729	332 aa	Known RBP	13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	KLF16	Q9BXK1	252 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	TMEM8A	Q9HCN3	771 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807	ASXL3	Q9C0F0	2248 aa		13.88	□□□□□ -0.19
DDX41-204	ENST00000504807		A0A1W2PQH9	124 aa		13.87	□□□□□ -0.19
DDX41-204	ENST00000504807	TULP2	O00295	520 aa		13.87	□□□□□ -0.19
DDX41-204	ENST00000504807	GADD45B	O75293	160 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX41-204	ENST00000504807	RAD23B	P54727	409 aa		13.87	□□□□□ -0.19
DDX41-204	ENST00000504807	IRX4	P78413	519 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms