RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 NAA35Q5VZE5 725 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 PMF1Q6P1K2 205 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 TMC8Q8IU68 726 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 SIX6OS1Q8N1H7 587 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 MSANTD4Q8NCY6 345 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 KCTD13Q8WZ19 329 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 FBXO32Q969P5 355 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 TRMT2BQ96GJ1 504 aaKnown RBP10.55□□□□□ -0.72
NUP54-203ENST00000504173 HSFY1Q96LI6 401 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 MYRFLQ96LU7 910 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 SLITRK1Q96PX8 696 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 DNAJC7Q99615 494 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 TTLL2Q9BWV7 592 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 LRRC3Q9BY71 257 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 EPC1Q9H2F5 836 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 ATXN3LQ9H3M9 355 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 WDR6Q9NNW5 1121 aaKnown RBP10.55□□□□□ -0.72
NUP54-203ENST00000504173 AVENQ9NQS1 362 aaPredicted RBP10.55□□□□□ -0.72
NUP54-203ENST00000504173 ST7Q9NRC1 585 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 ABHD10Q9NUJ1 306 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 COMMD8Q9NX08 183 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 WNT16Q9UBV4 365 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 FBXL21Q9UKT6 434 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 MRPS23Q9Y3D9 190 aaKnown RBP10.55□□□□□ -0.72
NUP54-203ENST00000504173 BZW2Q9Y6E2 419 aaKnown RBP10.55□□□□□ -0.72
NUP54-203ENST00000504173 PATJQ8NI35 1801 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 C2orf16Q68DN1 1984 aa10.55□□□□□ -0.72
NUP54-203ENST00000504173 A0A1W2PRU2 124 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 FAM170AA1A519 330 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 TAF4O00268 1085 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 ZNF197O14709 1029 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 LCP1P13796 627 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 CDC25CP30307 473 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 HNRNPH3P31942 346 aaKnown RBP10.54□□□□□ -0.72
NUP54-203ENST00000504173 CDH5P33151 784 aaPredicted RBP10.54□□□□□ -0.72
NUP54-203ENST00000504173 ACADSBP45954 432 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 NOMO3P69849 1222 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 TAF10Q12962 218 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 ARID5BQ14865 1188 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 RAB41Q5JT25 222 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 HGSNATQ68CP4 663 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 GET4Q7L5D6 327 aaPredicted RBP10.54□□□□□ -0.72
NUP54-203ENST00000504173 ZNF571Q7Z3V5 609 aaPredicted RBP10.54□□□□□ -0.72
NUP54-203ENST00000504173 VPS36Q86VN1 386 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 MAML2Q8IZL2 1156 aaPredicted RBP10.54□□□□□ -0.72
NUP54-203ENST00000504173 WDTC1Q8N5D0 677 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 TC2NQ8N9U0 490 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 PDZD8Q8NEN9 1154 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 IPO4Q8TEX9 1081 aaKnown RBP10.54□□□□□ -0.72
NUP54-203ENST00000504173 STK32AQ8WU08 396 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 ANP32BQ92688 251 aaKnown RBP10.54□□□□□ -0.72
NUP54-203ENST00000504173 PPP1R13BQ96KQ4 1090 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 PCDHB18PQ96TA0 734 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 SLC4A5Q9BY07 1137 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 ULBP1Q9BZM6 244 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 SYNCQ9H7C4 482 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 CYLDQ9NQC7 956 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 IL37Q9NZH6 218 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 IMPACTQ9P2X3 320 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 CYTH4Q9UIA0 394 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 USP18Q9UMW8 372 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 PCDHGA2Q9Y5H1 932 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 GREB1Q4ZG55 1949 aa10.54□□□□□ -0.72
NUP54-203ENST00000504173 DOCK6Q96HP0 2047 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 CACNA1IQ9P0X4 2223 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 KRBA1A5PL33 1030 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 E5RJQ4 531 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 TADA3O75528 432 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 FBXO21O94952 628 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 ZBED1O96006 694 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 ABL1P00519 1130 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 F11P03951 625 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 CYP1A1P04798 512 aaPredicted RBP10.53□□□□□ -0.72
NUP54-203ENST00000504173 PLEKP08567 350 aaPredicted RBP10.53□□□□□ -0.72
NUP54-203ENST00000504173 USP17L7P0C7H9 530 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 GJA1P17302 382 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 CEBPBP17676 345 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 CCR2P41597 374 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 NSFP46459 744 aaKnown RBP10.53□□□□□ -0.72
NUP54-203ENST00000504173 RPL34P49207 117 aaKnown RBP10.53□□□□□ -0.72
NUP54-203ENST00000504173 SNX16P57768 344 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 CYP4F8P98187 520 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 TEAD2Q15562 447 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 CLEC16AQ2KHT3 1053 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 SLC5A9Q2M3M2 681 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 PTPN20Q4JDL3 420 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 ARHGAP15Q53QZ3 475 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 PRSS36Q5K4E3 855 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 GAREM2Q75VX8 874 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 ERICH1Q86X53 443 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 ITFG1Q8TB96 612 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 SHKBP1Q8TBC3 707 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 CPA5Q8WXQ8 436 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 ING5Q8WYH8 240 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 OVCA2Q8WZ82 227 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 MRPS31Q92665 395 aaKnown RBP10.53□□□□□ -0.72
NUP54-203ENST00000504173 TCEAL4Q96EI5 215 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 CPXM1Q96SM3 734 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 SYT11Q9BT88 431 aa10.53□□□□□ -0.72
NUP54-203ENST00000504173 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms