RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 PCDHA7Q9UN72 937 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 ZNF510Q9Y2H8 683 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 ATP6V1DQ9Y5K8 247 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 SDK1Q7Z5N4 2213 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 FAM92AA1XBS5 289 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 SGK1O00141 431 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 NPC1O15118 1278 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 MAPK13O15264 365 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 STX10O60499 249 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 TULP3O75386 442 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 C4BPAP04003 597 aaKnown RBP12.22□□□□□ -0.45
COL6A3-213ENST00000493475 CFIP05156 583 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 NTSR1P30989 418 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 HOXC13P31276 330 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 KIR2DL1P43626 348 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-213ENST00000493475 SLC6A11P48066 632 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 CASP4P49662 377 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 NDST1P52848 882 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 CDH8P55286 799 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 ZXDBP98169 803 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 RPL6Q02878 288 aaKnown RBP12.22□□□□□ -0.45
COL6A3-213ENST00000493475 GFPT1Q06210 699 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-213ENST00000493475 HNRNPDQ14103 355 aaKnown RBP12.22□□□□□ -0.45
COL6A3-213ENST00000493475 STARD3Q14849 445 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 UAP1L1Q3KQV9 507 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 ZACNQ401N2 412 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 SYCP2LQ5T4T6 812 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 SH3PXD2AQ5TCZ1 1133 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 SCARA3Q6AZY7 606 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 KLHDC10Q6PID8 442 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 TMEM92Q6UXU6 159 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 HTR3DQ70Z44 454 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 CRYBG2Q8N1P7 616 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 ARHGAP18Q8N392 663 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 NAT16Q8N8M0 369 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 SCAMP5Q8TAC9 235 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 UCMAQ8WVF2 138 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 ZNF516Q92618 1163 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 BBS2Q9BXC9 721 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 CCSER2Q9H7U1 834 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 CSNK1G1Q9HCP0 422 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 RXFP3Q9NSD7 469 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 DNAJC17Q9NVM6 304 aaKnown RBP12.22□□□□□ -0.45
COL6A3-213ENST00000493475 IL37Q9NZH6 218 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 SUSD2Q9UGT4 822 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 DNMT3LQ9UJW3 386 aa12.22□□□□□ -0.45
COL6A3-213ENST00000493475 HELZP42694 1942 aaKnown RBP12.21□□□□□ -0.45
COL6A3-213ENST00000493475 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 TMEM8BA6NDV4 472 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 NEDD8-MDP1E9PL57 170 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 SCAMP3O14828 347 aaKnown RBP12.21□□□□□ -0.45
COL6A3-213ENST00000493475 NDUFS2O75306 463 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 CYBBP04839 570 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 SYPP08247 313 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 ZDHHC11BP0C7U3 371 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 CCDC130P13994 396 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 GNSP15586 552 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 CHKAP35790 457 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 PLA2G4AP47712 749 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 VAMP7P51809 220 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 ZNF132P52740 706 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 CACNA2D1P54289 1103 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 KRT85P78386 507 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 ENPEPQ07075 957 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 DUOXA1Q1HG43 343 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 GAB4Q2WGN9 574 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 SV2AQ7L0J3 742 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 BBS7Q8IWZ6 715 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 TMEFF1Q8IYR6 380 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 FUKQ8N0W3 1084 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 RNF166Q96A37 237 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-213ENST00000493475 PAGE5Q96GU1 130 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 FAXDC2Q96IV6 333 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 DCLK3Q9C098 648 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 FAM124BQ9H5Z6 455 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-213ENST00000493475 CYLDQ9NQC7 956 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 FAM49BQ9NUQ9 324 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 SERTAD1Q9UHV2 236 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 STRIP2Q9ULQ0 834 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 SLC6A14Q9UN76 642 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 SCML2Q9UQR0 700 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 STARD13Q9Y3M8 1113 aa12.21□□□□□ -0.45
COL6A3-213ENST00000493475 GFRA2O00451 464 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 CACNG3O60359 315 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 ASS1P00966 412 aaKnown RBP12.2□□□□□ -0.46
COL6A3-213ENST00000493475 TYRP14679 529 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 ACO1P21399 889 aaKnown RBP12.2□□□□□ -0.46
COL6A3-213ENST00000493475 BCKDHBP21953 392 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 CMA1P23946 247 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 NR2F2P24468 414 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 ADORA2BP29275 332 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 CASP1P29466 404 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 PSMC2P35998 433 aaKnown RBP12.2□□□□□ -0.46
COL6A3-213ENST00000493475 SYKP43405 635 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 MAPK8P45983 427 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 DGKGP49619 791 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 IRX4P78413 519 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 COG7P83436 770 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 ARID5AQ03989 594 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 FOXC1Q12948 553 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms