RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 TLL2Q9Y6L7 1015 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 CLDN5O00501 218 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 AFF1P51825 1210 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 ADCY1Q08828 1119 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 MGAT3Q09327 533 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 ADIGQ0VDE8 80 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 EFHC1Q5JVL4 640 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 RTP4Q96DX8 246 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 NRDE2Q9H7Z3 1164 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 SPC25Q9HBM1 224 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 AP4E1Q9UPM8 1137 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 TRIM66O15016 1216 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 NPR3P17342 541 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 CYP2F1P24903 491 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 TM4SF4P48230 202 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 IFNAR2P48551 515 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 NKX3-2P78367 333 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 MPP2Q14168 576 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 KIAA0319Q5VV43 1072 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 C6orf89Q6UWU4 347 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 SRRM1Q8IYB3 904 aaKnown RBP21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 CCDC185Q8N715 623 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 PYROXD1Q8WU10 500 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 LPPQ93052 612 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 SEC16BQ96JE7 1060 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 SENP8Q96LD8 212 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 DHX35Q9H5Z1 703 aaKnown RBP21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 KCNK9Q9NPC2 374 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 MTMR10Q9NXD2 777 aa21.96■■□□□ 1.11
CCDC88B-208ENST00000492980 POC1B-GALNT4F8VUJ3 575 aa21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 BEST1O76090 585 aa21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 MATKP42679 507 aa21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 FLT3LGP49771 235 aa21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 RNASELQ05823 741 aaKnown RBP21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 TRIM32Q13049 653 aa21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 KCNJ11Q14654 390 aa21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 STRADAQ7RTN6 431 aa21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 HACE1Q8IYU2 909 aa21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 MGARPQ8TDB4 240 aa21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 NDRG1Q92597 394 aaKnown RBP21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 MAGEB5Q9BZ81 275 aa21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 MIOSQ9NXC5 875 aa21.95■■□□□ 1.11
CCDC88B-208ENST00000492980 BCLAF3A2AJT9 711 aaKnown RBP21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 CFAP69A5D8W1 941 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 KCNN4O15554 427 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 SEPT4O43236 478 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 ADAMTS4O75173 837 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 THP07101 528 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 RBL1P28749 1068 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 SLC8A3P57103 927 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 LRRC14Q15048 493 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 MDH1BQ5I0G3 518 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 GKAP1Q5VSY0 366 aaPredicted RBP21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 RPAINQ86UA6 219 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 LRRC34Q8IZ02 419 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 DEFB106AQ8N104 65 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 ATP11CQ8NB49 1132 aa21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 KCTD15Q96SI1 283 aaPredicted RBP21.95■■□□□ 1.1
CCDC88B-208ENST00000492980 RASA4BC9J798 803 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 RASA4O43374 803 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 DAB1O75553 588 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 CLCNKBP51801 687 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 NR1H3Q13133 447 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 CLEC20AQ6ZU45 233 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 PDIK1LQ8N165 341 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 ANKRD42Q8N9B4 389 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 FBXO36Q8NEA4 188 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 KCTD13Q8WZ19 329 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 AGO3Q9H9G7 860 aaKnown RBP21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 PPCSQ9HAB8 311 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 DDX43Q9NXZ2 648 aaKnown RBP21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 PAK5Q9P286 719 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 MAP3K6O95382 1288 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 ZBED1O96006 694 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 SSTR1P30872 391 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 MRPS5P82675 430 aaKnown RBP21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 BBS9Q3SYG4 887 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 EFHC2Q5JST6 749 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 AGMOQ6ZNB7 445 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 YTHDF3Q7Z739 585 aaKnown RBP21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 TRABD2AQ86V40 505 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 CACNA2D3Q8IZS8 1091 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 OSBPL7Q9BZF2 842 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 CRTAC1Q9NQ79 661 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 SLC24A2Q9UI40 661 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 RABGEF1Q9UJ41 708 aa21.94■■□□□ 1.1
CCDC88B-208ENST00000492980 ARL5CA6NH57 179 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 CHADO15335 359 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 PHBP35232 272 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 SULT1E1P49888 294 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 RASA2Q15283 850 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 SLC25A52Q3SY17 297 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 FAM182AQ5T1J6 154 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 OTUD1Q5VV17 481 aaPredicted RBP21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 C3orf58Q8NDZ4 430 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 DYDC1Q8WWB3 177 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 FAM149B1Q96BN6 582 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 CSPG4P5Q96PW8 444 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 MED10Q9BTT4 135 aa21.93■■□□□ 1.1
CCDC88B-208ENST00000492980 GIT1Q9Y2X7 761 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms