RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 NAGPAQ9UK23 515 aa24.23■■□□□ 1.47
COL9A3-213ENST00000489045 NUDT5Q9UKK9 219 aa24.23■■□□□ 1.47
COL9A3-213ENST00000489045 PALM2-AKAP2B1ALY0 433 aaPredicted RBP24.22■■□□□ 1.47
COL9A3-213ENST00000489045 MDM4O15151 490 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 GREM1O60565 184 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 LRP3O75074 770 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 GOLGA8FQ08AF8 430 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 GOLGA8DPQ0D2H9 430 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 LRMPQ12912 555 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 PUM1Q14671 1186 aaKnown RBP eCLIP24.22■■□□□ 1.47
COL9A3-213ENST00000489045 CCDC40Q4G0X9 1142 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 HTR3DQ70Z44 454 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 TMEM25Q86YD3 366 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 DLL3Q9NYJ7 618 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 MMP17Q9ULZ9 603 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 USP3Q9Y6I4 520 aa24.22■■□□□ 1.47
COL9A3-213ENST00000489045 PPP1R3GB7ZBB8 358 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 BIN1O00499 593 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 HOXC11O43248 304 aaPredicted RBP24.21■■□□□ 1.47
COL9A3-213ENST00000489045 FMO5P49326 533 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 PSEN1P49768 467 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 FOXK2Q01167 660 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 MORC3Q14149 939 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 ANO4Q32M45 955 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 C10orf120Q5SQS8 335 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 BTBD8Q5XKL5 378 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 TTI2Q6NXR4 508 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 KLHDC10Q6PID8 442 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 CACNA2D4Q7Z3S7 1137 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 KBTBD6Q86V97 674 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 ETFBKMTQ8IXQ9 262 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 PHTF2Q8N3S3 785 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 CCDC33Q8N5R6 958 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 NAT16Q8N8M0 369 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 TSTD1Q8NFU3 115 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 NELFBQ8WX92 580 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 SEMA4GQ9NTN9 838 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 DNMT3LQ9UJW3 386 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 LSM7Q9UK45 103 aaKnown RBP24.21■■□□□ 1.47
COL9A3-213ENST00000489045 CTNND2Q9UQB3 1225 aa24.21■■□□□ 1.47
COL9A3-213ENST00000489045 MYO18AQ92614 2054 aaKnown RBP24.21■■□□□ 1.47
COL9A3-213ENST00000489045 PRR5-ARHGAP8B1AHC4 643 aa24.2■■□□□ 1.46
COL9A3-213ENST00000489045 CHRM1P11229 460 aaPredicted RBP24.2■■□□□ 1.46
COL9A3-213ENST00000489045 GRIA2P42262 883 aa24.2■■□□□ 1.46
COL9A3-213ENST00000489045 YWHAEP62258 255 aaKnown RBP24.2■■□□□ 1.46
COL9A3-213ENST00000489045 MRPS21P82921 87 aaKnown RBP24.2■■□□□ 1.46
COL9A3-213ENST00000489045 ARHGAP8P85298 464 aa24.2■■□□□ 1.46
COL9A3-213ENST00000489045 GOLGA7BQ2TAP0 167 aa24.2■■□□□ 1.46
COL9A3-213ENST00000489045 PIGZQ86VD9 579 aa24.2■■□□□ 1.46
COL9A3-213ENST00000489045 TTC30AQ86WT1 665 aa24.2■■□□□ 1.46
COL9A3-213ENST00000489045 ALLCQ8N6M5 410 aa24.2■■□□□ 1.46
COL9A3-213ENST00000489045 ANKRD52Q8NB46 1076 aa24.2■■□□□ 1.46
COL9A3-213ENST00000489045 UBXN6Q9BZV1 441 aa24.2■■□□□ 1.46
COL9A3-213ENST00000489045 EBF1Q9UH73 591 aa24.2■■□□□ 1.46
COL9A3-213ENST00000489045 CIZ1Q9ULV3 898 aaPredicted RBP24.2■■□□□ 1.46
COL9A3-213ENST00000489045 DYNC1LI1Q9Y6G9 523 aaKnown RBP24.2■■□□□ 1.46
COL9A3-213ENST00000489045 A0A0A0MRY4 1105 aa24.19■■□□□ 1.46
COL9A3-213ENST00000489045 TULP3O75386 442 aa24.19■■□□□ 1.46
COL9A3-213ENST00000489045 TIE1P35590 1138 aa24.19■■□□□ 1.46
COL9A3-213ENST00000489045 DGKEP52429 567 aa24.19■■□□□ 1.46
COL9A3-213ENST00000489045 RAB41Q5JT25 222 aa24.19■■□□□ 1.46
COL9A3-213ENST00000489045 DGLUCYQ7Z3D6 616 aa24.19■■□□□ 1.46
COL9A3-213ENST00000489045 TADA2BQ86TJ2 420 aa24.19■■□□□ 1.46
COL9A3-213ENST00000489045 UBR7Q8N806 425 aa24.19■■□□□ 1.46
COL9A3-213ENST00000489045 IL17RCQ8NAC3 791 aa24.19■■□□□ 1.46
COL9A3-213ENST00000489045 CLIC5Q9NZA1 410 aa24.19■■□□□ 1.46
COL9A3-213ENST00000489045 TSPAN16Q9UKR8 245 aa24.19■■□□□ 1.46
COL9A3-213ENST00000489045 KLF8O95600 359 aaPredicted RBP24.18■■□□□ 1.46
COL9A3-213ENST00000489045 RALAP11233 206 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 CD19P15391 556 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 TBXAS1P24557 533 aaPredicted RBP24.18■■□□□ 1.46
COL9A3-213ENST00000489045 TNFRSF4P43489 277 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 KIR2DL1P43626 348 aaPredicted RBP24.18■■□□□ 1.46
COL9A3-213ENST00000489045 PLA2G4AP47712 749 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 SLC8A3P57103 927 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 CSRP2Q16527 193 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 SGO2Q562F6 1265 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 EMC10Q5UCC4 262 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 MIB1Q86YT6 1006 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 ZNF276Q8N554 614 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 TXNDC5Q8NBS9 432 aaKnown RBP24.18■■□□□ 1.46
COL9A3-213ENST00000489045 TPSD1Q9BZJ3 242 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 DEC1Q9P2X7 70 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 RASAL2Q9UJF2 1139 aa24.18■■□□□ 1.46
COL9A3-213ENST00000489045 CDV3Q9UKY7 258 aaKnown RBP24.18■■□□□ 1.46
COL9A3-213ENST00000489045 BICDL2A1A5D9 508 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 NEDD8-MDP1E9PL57 170 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 TULP2O00295 520 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 EPN2O95208 641 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 SDHBP21912 280 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 BCAT1P54687 386 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 CRY1Q16526 586 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 ANO7Q6IWH7 933 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 FOXR2Q6PJQ5 311 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 TMEM92Q6UXU6 159 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 PRR23CQ6ZRP0 262 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 TPGS1Q6ZTW0 290 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 LOXL4Q96JB6 756 aa24.17■■□□□ 1.46
COL9A3-213ENST00000489045 ZC3H10Q96K80 434 aaKnown RBP24.17■■□□□ 1.46
COL9A3-213ENST00000489045 NT5C1BQ96P26 610 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms