RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 C10orf76Q5T2E6 689 aa19.47■□□□□ 0.71
HDAC6-231ENST00000488905 CEP135Q66GS9 1140 aa19.47■□□□□ 0.71
HDAC6-231ENST00000488905 SV2AQ7L0J3 742 aa19.47■□□□□ 0.71
HDAC6-231ENST00000488905 TMEM25Q86YD3 366 aa19.47■□□□□ 0.71
HDAC6-231ENST00000488905 C12orf29Q8N999 325 aa19.47■□□□□ 0.71
HDAC6-231ENST00000488905 PIGKQ92643 395 aa19.47■□□□□ 0.71
HDAC6-231ENST00000488905 TLR8Q9NR97 1041 aaKnown RBP19.47■□□□□ 0.71
HDAC6-231ENST00000488905 FRMD4BQ9Y2L6 1034 aa19.47■□□□□ 0.71
HDAC6-231ENST00000488905 IKBKBO14920 756 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 HLA-DRAP01903 254 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 MYL1P05976 194 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 TRIM21P19474 475 aaKnown RBP19.46■□□□□ 0.71
HDAC6-231ENST00000488905 INCA1Q0VD86 236 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 MAP7D1Q3KQU3 841 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 C1orf220Q5T0J3 134 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 ARMCX6Q7L4S7 300 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 GPRIN1Q7Z2K8 1008 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 FRMD1Q8N878 549 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 KCNV2Q8TDN2 545 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 CYLDQ9NQC7 956 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 USP25Q9UHP3 1055 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 EVLQ9UI08 416 aaPredicted RBP19.46■□□□□ 0.71
HDAC6-231ENST00000488905 MBD1Q9UIS9 605 aaPredicted RBP19.46■□□□□ 0.71
HDAC6-231ENST00000488905 PCNX2A6NKB5 2137 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 ZZEF1O43149 2961 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 CACNA1EQ15878 2313 aa19.46■□□□□ 0.71
HDAC6-231ENST00000488905 PCDH15Q96QU1 1955 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 A0A1B0GVL5 298 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 CDX4O14627 284 aaPredicted RBP19.45■□□□□ 0.7
HDAC6-231ENST00000488905 GIPC1O14908 333 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 CYP26A1O43174 497 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 MAP3K13O43283 966 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 CALUO43852 315 aaPredicted RBP19.45■□□□□ 0.7
HDAC6-231ENST00000488905 GREM1O60565 184 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 ADORA2BP29275 332 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 PTGER3P43115 390 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 ZNF252P-AS1Q0IIN9 211 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 BYSLQ13895 437 aaKnown RBP19.45■□□□□ 0.7
HDAC6-231ENST00000488905 SH3PXD2AQ5TCZ1 1133 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 CLEC20AQ6ZU45 233 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 NUDT18Q6ZVK8 323 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 TMEFF1Q8IYR6 380 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 PGBD3Q8N328 593 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 TWNKQ96RR1 684 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 KLF16Q9BXK1 252 aaPredicted RBP19.45■□□□□ 0.7
HDAC6-231ENST00000488905 IMPG2Q9BZV3 1241 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 SCML2Q9UQR0 700 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 TRAF3IP3Q9Y228 551 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 HPSEQ9Y251 543 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 IGF2RP11717 2491 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 SPEGQ15772 3267 aa19.45■□□□□ 0.7
HDAC6-231ENST00000488905 HHLA1C9JL84 531 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 NEDD8-MDP1E9PL57 170 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 TRIM24O15164 1050 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 MAPK13O15264 365 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 TBX18O95935 607 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 HOXB2P14652 356 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 IRX4P78413 519 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 GOLGA8FQ08AF8 430 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 GOLGA8DPQ0D2H9 430 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 TRIM61Q5EBN2 209 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 SPDYCQ5MJ68 293 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 LYSMD4Q5XG99 296 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 GRAMD4Q6IC98 578 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 HTR3DQ70Z44 454 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 SYT12Q8IV01 421 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 JAKMIP2Q96AA8 810 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 HNRNPABQ99729 332 aaKnown RBP19.44■□□□□ 0.7
HDAC6-231ENST00000488905 PNPLA8Q9NP80 782 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.44■□□□□ 0.7
HDAC6-231ENST00000488905 DNAJC17Q9NVM6 304 aaKnown RBP19.44■□□□□ 0.7
HDAC6-231ENST00000488905 OSER1Q9NX31 292 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 MARK1Q9P0L2 795 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 LSM7Q9UK45 103 aaKnown RBP19.44■□□□□ 0.7
HDAC6-231ENST00000488905 HCN2Q9UL51 889 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 PCDHA5Q9Y5H7 936 aa19.44■□□□□ 0.7
HDAC6-231ENST00000488905 ATXN2Q99700 1313 aaKnown RBP19.44■□□□□ 0.7
HDAC6-231ENST00000488905 CACNG3O60359 315 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 KIF20AO95235 890 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 TYRP14679 529 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 GABRG2P18507 467 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 CMA1P23946 247 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 NR2F2P24468 414 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 ATP5C1P36542 298 aaKnown RBP19.43■□□□□ 0.7
HDAC6-231ENST00000488905 DPP6P42658 865 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 VAMP7P51809 220 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 LMAN2Q12907 356 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 EGFLAMQ63HQ2 1017 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 MIB1Q86YT6 1006 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 BBS2Q9BXC9 721 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 NT5C1AQ9BXI3 368 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 NUSAP1Q9BXS6 441 aaKnown RBP19.43■□□□□ 0.7
HDAC6-231ENST00000488905 APOBEC3GQ9HC16 384 aaKnown RBP19.43■□□□□ 0.7
HDAC6-231ENST00000488905 STARD13Q9Y3M8 1113 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 AKAP13Q12802 2813 aa19.43■□□□□ 0.7
HDAC6-231ENST00000488905 PRR29P0C7W0 189 aa19.42■□□□□ 0.7
HDAC6-231ENST00000488905 TRIM49P0CI25 452 aa19.42■□□□□ 0.7
HDAC6-231ENST00000488905 TRIM49CP0CI26 452 aa19.42■□□□□ 0.7
HDAC6-231ENST00000488905 CSRP1P21291 193 aaKnown RBP19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms