RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 NME7Q9Y5B8 376 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 EPG5Q9HCE0 2579 aa17.95■□□□□ 0.46
VIM-205ENST00000485947 TPRP12270 2363 aaKnown RBP17.95■□□□□ 0.46
VIM-205ENST00000485947 DMXL1Q9Y485 3027 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 F8VP50 259 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 SPECC1L-ADORA2AF8WAN1 911 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 CCP110O43303 1012 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 ACO1P21399 889 aaKnown RBP17.94■□□□□ 0.46
VIM-205ENST00000485947 CTHP32929 405 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 INCA1Q0VD86 236 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 CCDC142Q17RM4 750 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 RAD9BQ6WBX8 426 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 VPS36Q86VN1 386 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 NUP93Q8N1F7 819 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 KIAA1524Q8TCG1 905 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 SMARCD1Q96GM5 515 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 ARID3AQ99856 593 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 B3GNT5Q9BYG0 378 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 HAUS4Q9H6D7 363 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 DMAP1Q9NPF5 467 aaPredicted RBP17.94■□□□□ 0.46
VIM-205ENST00000485947 PRMT8Q9NR22 394 aaPredicted RBP17.94■□□□□ 0.46
VIM-205ENST00000485947 GKN1Q9NS71 199 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 KCND1Q9NSA2 647 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 ARHGAP26Q9UNA1 814 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 PCDHGA2Q9Y5H1 932 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 EP300Q09472 2414 aaPredicted RBP17.94■□□□□ 0.46
VIM-205ENST00000485947 MIA3Q5JRA6 1907 aa17.94■□□□□ 0.46
VIM-205ENST00000485947 ZNF292O60281 2723 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 COL4A2P08572 1712 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 EIF3CLB5ME19 914 aaKnown RBP17.93■□□□□ 0.46
VIM-205ENST00000485947 NDUFA10O95299 355 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 IPO7O95373 1038 aaKnown RBP17.93■□□□□ 0.46
VIM-205ENST00000485947 CKMP06732 381 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 PNMA6AP0CW24 399 aaPredicted RBP17.93■□□□□ 0.46
VIM-205ENST00000485947 CHRNB1P11230 501 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 HDCP19113 662 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 EIF4A3P38919 411 aaKnown RBP17.93■□□□□ 0.46
VIM-205ENST00000485947 ID4P47928 161 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 CCR3P51677 355 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 NRLP54845 237 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 CDH8P55286 799 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 ARID5AQ03989 594 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 RUNX3Q13761 415 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 MAML2Q8IZL2 1156 aaPredicted RBP17.93■□□□□ 0.46
VIM-205ENST00000485947 NELL1Q92832 810 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 ELMO3Q96BJ8 720 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 EIF3CQ99613 913 aaKnown RBP17.93■□□□□ 0.46
VIM-205ENST00000485947 ZNF518BQ9C0D4 1074 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 DPEP3Q9H4B8 488 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 LMAN1LQ9HAT1 526 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 GTSE1Q9NYZ3 720 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 IL37Q9NZH6 218 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 NDRG2Q9UN36 371 aaKnown RBP17.93■□□□□ 0.46
VIM-205ENST00000485947 PCDHB4Q9Y5E5 795 aa17.93■□□□□ 0.46
VIM-205ENST00000485947 EPN1Q9Y6I3 576 aaPredicted RBP17.93■□□□□ 0.46
VIM-205ENST00000485947 DNAH14Q0VDD8 3507 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 ZNF840PA6NDX5 716 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 OLFM2O95897 454 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 KRT5P13647 590 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 YWHAQP27348 245 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 CLCN1P35523 988 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 USP8P40818 1118 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 KIF11P52732 1056 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 SLC7A9P82251 487 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 MTF1Q14872 753 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 ZNF77Q15935 545 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 ASTE1Q2TB18 679 aaPredicted RBP17.92■□□□□ 0.46
VIM-205ENST00000485947 SNX30Q5VWJ9 437 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 SCARA5Q6ZMJ2 495 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 FAM35AQ86V20 835 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 ZNF677Q86XU0 584 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 SPEM1Q8N4L4 309 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 STKLD1Q8NE28 680 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 OSCP1Q8WVF1 389 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 CSNK1G1Q9HCP0 422 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 TRPC7Q9HCX4 862 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 CISHQ9NSE2 258 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 CCL26Q9Y258 94 aa17.92■□□□□ 0.46
VIM-205ENST00000485947 FAM92AA1XBS5 289 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 ESPNB1AK53 854 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 CYP26A1O43174 497 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 ZSCAN12O43309 604 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 AKR1B10O60218 316 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 PAPSS2O95340 614 aaPredicted RBP17.91■□□□□ 0.46
VIM-205ENST00000485947 LCA5LO95447 670 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 LMNAP02545 664 aaKnown RBP17.91■□□□□ 0.46
VIM-205ENST00000485947 PLEKP08567 350 aaPredicted RBP17.91■□□□□ 0.46
VIM-205ENST00000485947 CCDC175P0C221 793 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 TUBP50607 506 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 NDST1P52848 882 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 KRT83P78385 493 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 PTK2Q05397 1052 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 USP4Q13107 963 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 MTAPQ13126 283 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 NR1H3Q13133 447 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 TMEM270Q6UE05 265 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 ZNF571Q7Z3V5 609 aaPredicted RBP17.91■□□□□ 0.46
VIM-205ENST00000485947 DDX42Q86XP3 938 aaKnown RBP eCLIP17.91■□□□□ 0.46
VIM-205ENST00000485947 FUKQ8N0W3 1084 aa17.91■□□□□ 0.46
VIM-205ENST00000485947 CPA6Q8N4T0 437 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms