RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 NAA35Q5VZE5 725 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 BSPRYQ5W0U4 402 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 CC2D1AQ6P1N0 951 aaPredicted RBP12.42□□□□□ -0.42
HPS4-214ENST00000485842 TRIM67Q6ZTA4 783 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 TADA2BQ86TJ2 420 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 DDX42Q86XP3 938 aaKnown RBP eCLIP12.42□□□□□ -0.42
HPS4-214ENST00000485842 ZNF677Q86XU0 584 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 MIB1Q86YT6 1006 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 SCUBE3Q8IX30 993 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 SCML4Q8N228 414 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 STK32AQ8WU08 396 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 CPLX3Q8WVH0 158 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 IRGQQ8WZA9 623 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 GOLGA1Q92805 767 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 FAM149B1Q96BN6 582 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 ASIC4Q96FT7 647 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 CDK5RAP1Q96SZ6 601 aaKnown RBP12.42□□□□□ -0.42
HPS4-214ENST00000485842 NUP58Q9BVL2 599 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 SLC2A4RGQ9NR83 387 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 CLIC5Q9NZA1 410 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 MYO6Q9UM54 1294 aa12.42□□□□□ -0.42
HPS4-214ENST00000485842 VCANP13611 3396 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 TMEM221A6NGB7 291 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 M0R296 226 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 CHADO15335 359 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 PAPSS1O43252 624 aaPredicted RBP12.41□□□□□ -0.42
HPS4-214ENST00000485842 SART1O43290 800 aaKnown RBP12.41□□□□□ -0.42
HPS4-214ENST00000485842 TECTAO75443 2155 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 LSM8O95777 96 aaKnown RBP12.41□□□□□ -0.42
HPS4-214ENST00000485842 ERBB2P04626 1255 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 COL4A2P08572 1712 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 CDH5P33151 784 aaPredicted RBP12.41□□□□□ -0.42
HPS4-214ENST00000485842 IFNAR2P48551 515 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 RPL34P49207 117 aaKnown RBP12.41□□□□□ -0.42
HPS4-214ENST00000485842 NOMO3P69849 1222 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 PFKPQ01813 784 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 FIGNQ5HY92 759 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 IER5LQ5T953 404 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 E4F1Q66K89 784 aaPredicted RBP12.41□□□□□ -0.42
HPS4-214ENST00000485842 TRIM68Q6AZZ1 485 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 OR6B2Q6IFH4 312 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 TMEM110Q86TL2 294 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 FMNL3Q8IVF7 1028 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 SIX5Q8N196 739 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 TTC8Q8TAM2 541 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 CSGALNACT1Q8TDX6 532 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 RNF139Q8WU17 664 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 CPA5Q8WXQ8 436 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 IRF7Q92985 503 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 ZFRQ96KR1 1074 aaKnown RBP12.41□□□□□ -0.42
HPS4-214ENST00000485842 EDEM3Q9BZQ6 932 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 TRIM5Q9C035 493 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 ARHGEF3Q9NR81 526 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 HEBP1Q9NRV9 189 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 GKN1Q9NS71 199 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 MARCH2Q9P0N8 246 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 DNMT3LQ9UJW3 386 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 SH3BP1Q9Y3L3 701 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 WNT6Q9Y6F9 365 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 COL4A3Q01955 1670 aa12.41□□□□□ -0.42
HPS4-214ENST00000485842 ITIH6Q6UXX5 1313 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 A0A1W2PQJ5 194 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 SLC12A8A0AV02 714 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 AP5Z1O43299 807 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 GYPCP04921 128 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 HMBSP08397 361 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 TCF3P15923 654 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 SNX16P57768 344 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 TNK2Q07912 1038 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 GOLGA8FQ08AF8 430 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 GOLGA8DPQ0D2H9 430 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 C2CD6Q53TS8 623 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 TRIM72Q6ZMU5 477 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 FAM183BPQ6ZVS7 135 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 ERICH1Q86X53 443 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 MSANTD4Q8NCY6 345 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 ZNF397Q8NF99 534 aaPredicted RBP12.4□□□□□ -0.42
HPS4-214ENST00000485842 DNASE1L2Q92874 299 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 WBP2Q969T9 261 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 IQCDQ96DY2 449 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 PIWIL1Q96J94 861 aaKnown RBP12.4□□□□□ -0.42
HPS4-214ENST00000485842 PCDHB18PQ96TA0 734 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 AGPAT1Q99943 283 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 ANP32EQ9BTT0 268 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 KLF16Q9BXK1 252 aaPredicted RBP12.4□□□□□ -0.42
HPS4-214ENST00000485842 MFSD1Q9H3U5 465 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 EBF3Q9H4W6 596 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 ABCC13Q9NSE7 274 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 OLA1Q9NTK5 396 aaKnown RBP12.4□□□□□ -0.42
HPS4-214ENST00000485842 DUS2Q9NX74 493 aaKnown RBP12.4□□□□□ -0.42
HPS4-214ENST00000485842 STRIP2Q9ULQ0 834 aa12.4□□□□□ -0.42
HPS4-214ENST00000485842 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.4□□□□□ -0.42
HPS4-214ENST00000485842 KRBA1A5PL33 1030 aa12.39□□□□□ -0.43
HPS4-214ENST00000485842 GOLGA8SH3BPF8 625 aa12.39□□□□□ -0.43
HPS4-214ENST00000485842 CAPN9O14815 690 aa12.39□□□□□ -0.43
HPS4-214ENST00000485842 MSI1O43347 362 aaKnown RBP12.39□□□□□ -0.43
HPS4-214ENST00000485842 GRAP2O75791 330 aa12.39□□□□□ -0.43
HPS4-214ENST00000485842 PDGFBP01127 241 aaPredicted RBP12.39□□□□□ -0.43
HPS4-214ENST00000485842 CYP1A1P04798 512 aaPredicted RBP12.39□□□□□ -0.43
HPS4-214ENST00000485842 SKILP12757 684 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms