RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 M0R3H8 397 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 CA12O43570 354 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 MGEA5O60502 916 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 PRAMEF2O60811 474 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 A1BGP04217 495 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 YY1P25490 414 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 HTR7P34969 479 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 MMP13P45452 471 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 SLC14A1Q13336 389 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 GFOD2Q3B7J2 385 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 RRAGBQ5VZM2 374 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 GRHL2Q6ISB3 625 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 CLEC9AQ6UXN8 241 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 RAB11FIP4Q86YS3 637 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 WDR75Q8IWA0 830 aaKnown RBP3.91□□□□□ -1.78
VPS50-216ENST00000484954 YAF2Q8IY57 180 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.91□□□□□ -1.78
VPS50-216ENST00000484954 MAP4K1Q92918 833 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 EDC3Q96F86 508 aaKnown RBP3.91□□□□□ -1.78
VPS50-216ENST00000484954 MSLNLQ96KJ4 702 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 SNX22Q96L94 193 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 FCRL4Q96PJ5 515 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 HIST1H2AAQ96QV6 131 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 SELENOOQ9BVL4 669 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 SNX15Q9NRS6 342 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 TRNAU1APQ9NX07 287 aaKnown RBP3.91□□□□□ -1.78
VPS50-216ENST00000484954 TUBA8Q9NY65 449 aaPredicted RBP3.91□□□□□ -1.78
VPS50-216ENST00000484954 HPSEQ9Y251 543 aa3.91□□□□□ -1.78
VPS50-216ENST00000484954 CLIC1O00299 241 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 TMPRSS11DO60235 418 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 IGKV2-30P06310 120 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 CYP19A1P11511 503 aaPredicted RBP3.9□□□□□ -1.79
VPS50-216ENST00000484954 ATF3P18847 181 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 PTGER1P34995 402 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 COPAP53621 1224 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 YPEL5P62699 121 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 GPC5P78333 572 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 TMTC4Q5T4D3 741 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 KLHDC7AQ5VTJ3 777 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 PPP4R4Q6NUP7 873 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 NRACQ8N912 160 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 OSR1Q8TAX0 266 aaPredicted RBP3.9□□□□□ -1.79
VPS50-216ENST00000484954 FAM118BQ9BPY3 351 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 TRIM36Q9NQ86 728 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 DNAJB11Q9UBS4 358 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 ZNF212Q9UDV6 495 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 RGS17Q9UGC6 210 aaPredicted RBP3.9□□□□□ -1.79
VPS50-216ENST00000484954 CAPN11Q9UMQ6 739 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 CORO2BQ9UQ03 480 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 AFG3L2Q9Y4W6 797 aa3.9□□□□□ -1.79
VPS50-216ENST00000484954 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.89□□□□□ -1.79
VPS50-216ENST00000484954 GOLGA6CA6NDK9 693 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 GOLGA6BA6NDN3 693 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 AQP7P3A6NL99 342 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 H3BNC9 293 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 DSCR3O14972 297 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 FYB1O15117 783 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 MBPP02686 304 aaPredicted RBP3.89□□□□□ -1.79
VPS50-216ENST00000484954 GOLGA6DP0CG33 693 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 NR4A2P43354 598 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 MTAPQ13126 283 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 KCNB1Q14721 858 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 MFSD13AQ14CX5 517 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 TRIP6Q15654 476 aaKnown RBP3.89□□□□□ -1.79
VPS50-216ENST00000484954 SHC4Q6S5L8 630 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 RANBP10Q6VN20 620 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 TECPR1Q7Z6L1 1165 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 ANKRD13AQ8IZ07 590 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 NANOGP1Q8N7R0 232 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 C12orf76Q8N812 135 aaPredicted RBP3.89□□□□□ -1.79
VPS50-216ENST00000484954 PRSS3P2Q8NHM4 247 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 HS6ST2Q96MM7 605 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 FAM83DQ9H4H8 585 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 USP29Q9HBJ7 922 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 GJB4Q9NTQ9 266 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 TMEM184CQ9NVA4 438 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 GAR1Q9NY12 217 aaKnown RBP3.89□□□□□ -1.79
VPS50-216ENST00000484954 GOLGA6AQ9NYA3 693 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 MTMR4Q9NYA4 1195 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 NKX1-2Q9UD57 310 aaPredicted RBP3.89□□□□□ -1.79
VPS50-216ENST00000484954 CNTNAP2Q9UHC6 1331 aa3.89□□□□□ -1.79
VPS50-216ENST00000484954 A8MVJ9 347 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 RBL1P28749 1068 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 THBS4P35443 961 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 PIK3CBP42338 1070 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 EIF4A1P60842 406 aaKnown RBP3.88□□□□□ -1.79
VPS50-216ENST00000484954 CFHR3Q02985 330 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 CFHR1Q03591 330 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 TRIM71Q2Q1W2 868 aaKnown RBP3.88□□□□□ -1.79
VPS50-216ENST00000484954 AWAT2Q6E213 333 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 LIX1LQ8IVB5 337 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 FMNL3Q8IVF7 1028 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 PNPLA1Q8N8W4 532 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 PHKBQ93100 1093 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 COQ8BQ96D53 544 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 STRBPQ96SI9 672 aaKnown RBP3.88□□□□□ -1.79
VPS50-216ENST00000484954 BTBD1Q9H0C5 482 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 SAP30LQ9HAJ7 183 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 MLXIPLQ9NP71 852 aa3.88□□□□□ -1.79
VPS50-216ENST00000484954 PRDM11Q9NQV5 511 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms