RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 GJB3O75712 270 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 PYGBP11216 843 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 SLC5A3P53794 718 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 CACNA2D1P54289 1103 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 STARD3Q14849 445 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 E2F5Q15329 346 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 EGFLAMQ63HQ2 1017 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 CCNI2Q6ZMN8 369 aaPredicted RBP13.34□□□□□ -0.27
SKA3-206ENST00000475251 GLRX5Q86SX6 157 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 PDZD3Q86UT5 571 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 SPRYD3Q8NCJ5 442 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 OR2I1PQ8NGU4 316 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 CGRRF1Q99675 332 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 MED10Q9BTT4 135 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 BBS2Q9BXC9 721 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 FGFBP2Q9BYJ0 223 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 DPEP3Q9H4B8 488 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 FBXO44Q9H4M3 255 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 CCSER2Q9H7U1 834 aa13.34□□□□□ -0.27
SKA3-206ENST00000475251 TLR8Q9NR97 1041 aaKnown RBP13.34□□□□□ -0.27
SKA3-206ENST00000475251 CHORDC1Q9UHD1 332 aaPredicted RBP13.34□□□□□ -0.27
SKA3-206ENST00000475251 FAM92AA1XBS5 289 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 EIF4E1BA6NMX2 242 aaKnown RBP13.33□□□□□ -0.28
SKA3-206ENST00000475251 NEDD8-MDP1E9PL57 170 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 CLDN5O00501 218 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 NPC1O15118 1278 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 EIF3DO15371 548 aaKnown RBP eCLIP13.33□□□□□ -0.28
SKA3-206ENST00000475251 CER1O95813 267 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 CST3P01034 146 aaPredicted RBP13.33□□□□□ -0.28
SKA3-206ENST00000475251 ZDHHC11BP0C7U3 371 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 IRF1P10914 325 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 TYRP14679 529 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 TRIM21P19474 475 aaKnown RBP13.33□□□□□ -0.28
SKA3-206ENST00000475251 PDCP20941 246 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 CD6P30203 668 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 DGKGP49619 791 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 ZNF132P52740 706 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 SNRPFP62306 86 aaKnown RBP13.33□□□□□ -0.28
SKA3-206ENST00000475251 GRIK2Q13002 908 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 PSMD6Q15008 389 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 C19orf48Q6RUI8 117 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 IL27RAQ6UWB1 636 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 KIAA1324Q6UXG2 1013 aaKnown RBP13.33□□□□□ -0.28
SKA3-206ENST00000475251 TOGARAM2Q6ZUX3 1019 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 HTR3DQ70Z44 454 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 METTL3Q86U44 580 aaKnown RBP13.33□□□□□ -0.28
SKA3-206ENST00000475251 FAM35AQ86V20 835 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 MIB1Q86YT6 1006 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 MRGPRX1Q96LB2 322 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 CAMK1GQ96NX5 476 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 KCNK16Q96T55 309 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 TMEM30AQ9NV96 361 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 IL37Q9NZH6 218 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 MARK1Q9P0L2 795 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 KIAA1522Q9P206 1035 aaPredicted RBP13.33□□□□□ -0.28
SKA3-206ENST00000475251 NXF1Q9UBU9 619 aaKnown RBP13.33□□□□□ -0.28
SKA3-206ENST00000475251 NME7Q9Y5B8 376 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 CLIC4Q9Y696 253 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 MYO18AQ92614 2054 aaKnown RBP13.33□□□□□ -0.28
SKA3-206ENST00000475251 CACNA1EQ15878 2313 aa13.33□□□□□ -0.28
SKA3-206ENST00000475251 VPS37CA5D8V6 355 aaPredicted RBP13.32□□□□□ -0.28
SKA3-206ENST00000475251 TLR5O60602 858 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 PHACTR2O75167 634 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 CLSTN1O94985 981 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 ZNF883P0CG24 379 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 COL28A1Q2UY09 1125 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 XXYLT1Q8NBI6 393 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 RDH13Q8NBN7 331 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 CADM4Q8NFZ8 388 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 SCAMP5Q8TAC9 235 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 DNASE2BQ8WZ79 361 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 CCDC127Q96BQ5 260 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 CLIC6Q96NY7 704 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 ACOX2Q99424 681 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 TNMDQ9H2S6 317 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 CD248Q9HCU0 757 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 SCUBE2Q9NQ36 999 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 GMIPQ9P107 970 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 HCN2Q9UL51 889 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 GON4LQ3T8J9 2241 aa13.32□□□□□ -0.28
SKA3-206ENST00000475251 NCAM1P13591 858 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 OXTRP30559 389 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 ATP5C1P36542 298 aaKnown RBP13.31□□□□□ -0.28
SKA3-206ENST00000475251 AP3M2P53677 418 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 MYL6P60660 151 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 AMPD3Q01432 767 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 CYP24A1Q07973 514 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 SOWAHCQ53LP3 525 aaPredicted RBP13.31□□□□□ -0.28
SKA3-206ENST00000475251 ZNF667Q5HYK9 610 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 TPGS1Q6ZTW0 290 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 PNPLA1Q8N8W4 532 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 SETD7Q8WTS6 366 aaKnown RBP13.31□□□□□ -0.28
SKA3-206ENST00000475251 SPOCK2Q92563 424 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 CDC6Q99741 560 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 CUEDC2Q9H467 287 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 VRTNQ9H8Y1 702 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 PRDM16Q9HAZ2 1276 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 AGPAT3Q9NRZ7 376 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 KRT82Q9NSB4 513 aa13.31□□□□□ -0.28
SKA3-206ENST00000475251 CACNA2D2Q9NY47 1150 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms