RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 HGFP14210 728 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 EPHA3P29320 983 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 CPA2P48052 419 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 DGKKQ5KSL6 1271 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 ZNF324BQ6AW86 544 aaPredicted RBP4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 C12orf76Q8N812 135 aaPredicted RBP4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 MTFMTQ96DP5 389 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 TRMT61AQ96FX7 289 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 PIH1D1Q9NWS0 290 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 MSRB1Q9NZV6 116 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 GABBR1Q9UBS5 961 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 RIMKLBQ9ULI2 386 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 FZD4Q9ULV1 537 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 PCDHA12Q9UN75 941 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 USP22Q9UPT9 525 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 SPEF1Q9Y4P9 236 aa4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 SIRT4Q9Y6E7 314 aaPredicted RBP4.09□□□□□ -1.75
CCDC88A-212ENST00000474059 MYO1CO00159 1063 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 INPPL1O15357 1258 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 CTIFO43310 598 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 ATG13O75143 517 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 SNUPNO95149 360 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 NDUFB8O95169 186 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 PLAUP00749 431 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 NCLP19338 710 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 HOXA7P31268 230 aaPredicted RBP4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 FGL2Q14314 439 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 KPNB1Q14974 876 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 CC2D1BQ5T0F9 858 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 TMEM63BQ5T3F8 832 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 RNF187Q5TA31 235 aaPredicted RBP4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 ZNF783Q6ZMS7 281 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 RBM23Q86U06 439 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 GRAMD1CQ8IYS0 662 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 CHPFQ8IZ52 775 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 SPARTQ8N0X7 666 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 DIS3LQ8TF46 1054 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 HIC2Q96JB3 615 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 HS6ST2Q96MM7 605 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 NLRP4Q96MN2 994 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 ZMAT3Q9HA38 289 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 TCF7L1Q9HCS4 588 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 TRIM36Q9NQ86 728 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 TXLNGQ9NUQ3 528 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 TMEM45AQ9NWC5 275 aa4.08□□□□□ -1.76
CCDC88A-212ENST00000474059 TMEM272A0A1B0GTI8 110 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 SLC22A23A1A5C7 686 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 ALG1L2C9J202 215 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 EXOC5O00471 708 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 GAS8-AS1O95177 125 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 PRTGQ2VWP7 1150 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 TTLL5Q6EMB2 1281 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 B3GNT9Q6UX72 402 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 RFX8Q6ZV50 586 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 MICU3Q86XE3 530 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 WFIKKN2Q8TEU8 576 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 MIB2Q96AX9 1013 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 GPATCH3Q96I76 525 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 LMLNQ96KR4 655 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 MAP3K14Q99558 947 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 COG5Q9UP83 839 aa4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 LUC7L2Q9Y383 392 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-212ENST00000474059 TRBV5-3A0A0A0MS03 114 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 H7C4K7 107 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 RRP9O43818 475 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 KITP10721 976 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 TACR3P29371 465 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 HOXA11P31270 313 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 SLC13A2Q13183 592 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 ASIC2Q16515 512 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 PTPROQ16827 1216 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 MANEAQ5SRI9 462 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 ASPHD1Q5U4P2 390 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 NUGGCQ68CJ6 796 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 USP49Q70CQ1 688 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 PNPLA1Q8N8W4 532 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 PPP1R35Q8TAP8 253 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 C1GALT1C1Q96EU7 318 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 PRR11Q96HE9 360 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 FCRL5Q96RD9 977 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 NUP88Q99567 741 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 STK32BQ9NY57 414 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 MAFFQ9ULX9 164 aa4.06□□□□□ -1.76
CCDC88A-212ENST00000474059 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 A8MVJ9 347 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 SPTLC2O15270 562 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 TGFB3P10600 412 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 EN2P19622 333 aaPredicted RBP4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 HTR1BP28222 390 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 PRKAR1BP31321 381 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 IDUAP35475 653 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 P2RX3P56373 397 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 DENND2CQ68D51 928 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 MPP5Q8N3R9 675 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 OR6B3Q8NGW1 331 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 P2RY11Q96G91 374 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 SLITRK1Q96PX8 696 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 TMEM204Q9BSN7 226 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 ARHGAP39Q9C0H5 1083 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms