RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SYPL2Q5VXT5 272 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 IQSEC1Q6DN90 963 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 FAM193BQ96PV7 902 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 PAFAH2Q99487 392 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 VPS11Q9H270 941 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 UGT1A7Q9HAW7 530 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 UGT1A10Q9HAW8 530 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 UGT1A8Q9HAW9 530 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 RRN3P2A6NIE6 340 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 EPHB2P29323 1055 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 MOGSQ13724 837 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 FAM110CQ1W6H9 321 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 CCDC14Q49A88 953 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 CDCA2Q69YH5 1023 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 RSPH3Q86UC2 560 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 GPATCH11Q8N954 259 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 TSPYL2Q9H2G4 693 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 ZFYVE28Q9HCC9 887 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 ITGA11Q9UKX5 1188 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 XPOTO43592 962 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 PTK7Q13308 1070 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 VPS52Q8N1B4 723 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 ALLCQ8N6M5 410 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 KLHL29Q96CT2 875 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 EPB41L4BQ9H329 900 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 RSAD1Q9HA92 442 aa14.28□□□□□ -0.12
CCDC88A-211ENST00000471947 TRIM49D1C9J1S8 452 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 ITGBL1O95965 494 aaPredicted RBP14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 ZBTB48P10074 688 aaPredicted RBP14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 TKTP29401 623 aaKnown RBP14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 GBP1P32455 592 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 CPT1AP50416 773 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 SLC6A3Q01959 620 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 DPYSL3Q14195 570 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 CST9Q5W186 159 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 PACS2Q86VP3 889 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 PLCD3Q8N3E9 789 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 KCNV2Q8TDN2 545 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 VCPIP1Q96JH7 1222 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 KLC2Q9H0B6 622 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 CNOT10Q9H9A5 744 aaKnown RBP14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 ETNK1Q9HBU6 452 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 PTPRHQ9HD43 1115 aa14.27□□□□□ -0.12
CCDC88A-211ENST00000471947 TRAPPC3O43617 180 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 AOC2O75106 756 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 PYGBP11216 843 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 RGS2P41220 211 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 FAAP100Q0VG06 881 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 ERMARDQ5T6L9 678 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 TRNP1Q6NT89 227 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 C16orf46Q6P387 395 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 ABI1Q8IZP0 508 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 ATP11CQ8NB49 1132 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 CPT1BQ92523 772 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 MECRQ9BV79 373 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 WDR35Q9P2L0 1181 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 THP07101 528 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 ZNF268Q14587 947 aaPredicted RBP14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 TFAP2DQ7Z6R9 452 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 PPIL6Q8IXY8 311 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 RUBCNQ92622 972 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 TNIP3Q96KP6 325 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 XPNPEP3Q9NQH7 507 aa14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.27□□□□□ -0.13
CCDC88A-211ENST00000471947 NRCAMQ92823 1304 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 IGKV6-21A0A0C4DH24 114 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 ABLIM1O14639 778 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 MDM4O15151 490 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 MSI1O43347 362 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 BNIP3LO60238 219 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 LPXNO60711 386 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 SUN1O94901 812 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 FAM200BP0CF97 657 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 SKOR1P84550 965 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 ARMC2Q8NEN0 867 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 FAM129AQ9BZQ8 928 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 FAM189A1O60320 539 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 UBOX5O94941 541 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 ZNF143P52747 638 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 CORO7P57737 925 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 PRKCZQ05513 592 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 SETDB1Q15047 1291 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 IGDCC3Q8IVU1 814 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 B3GALNT2Q8NCR0 500 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 ZNF560Q96MR9 790 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 UBN1Q9NPG3 1134 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 SLC12A6Q9UHW9 1150 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 ETFBP38117 255 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 LILRA4P59901 499 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 MFSD14CQ5VZR4 134 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 OSTM1Q86WC4 334 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 RNF135Q8IUD6 432 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 TTC13Q8NBP0 860 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 PCDH19Q8TAB3 1148 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 SCAMP5Q8TAC9 235 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 KAT2BQ92831 832 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 TMEM237Q96Q45 408 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 SYT15Q9BQS2 421 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 CD248Q9HCU0 757 aa14.26□□□□□ -0.13
CCDC88A-211ENST00000471947 SLC17A7Q9P2U7 560 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms