RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 LSM7Q9UK45 103 aaKnown RBP16.5■□□□□ 0.23
HDAC6-218ENST00000470942 M0QYV0 167 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 RNF40O75150 1001 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 ZBED1O96006 694 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 LMNAP02545 664 aaKnown RBP16.49■□□□□ 0.23
HDAC6-218ENST00000470942 SETSIPP0DME0 302 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 ADH5P11766 374 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 LCP1P13796 627 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 SLC9A1P19634 815 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 OPRD1P41143 372 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 PLA2G4AP47712 749 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 NRLP54845 237 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 MFAP3P55082 362 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 YWHAGP61981 247 aaKnown RBP eCLIP16.49■□□□□ 0.23
HDAC6-218ENST00000470942 ADIGQ0VDE8 80 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 EFEMP1Q12805 493 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 STILQ15468 1287 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 CNGA2Q16280 664 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 LY6G5CQ5SRR4 150 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 KLHDC10Q6PID8 442 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 TRIM65Q6PJ69 517 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 USP34Q70CQ2 3546 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 RSRC2Q7L4I2 434 aaKnown RBP16.49■□□□□ 0.23
HDAC6-218ENST00000470942 MIB1Q86YT6 1006 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 SIX6OS1Q8N1H7 587 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 NDRG1Q92597 394 aaKnown RBP16.49■□□□□ 0.23
HDAC6-218ENST00000470942 CDK5RAP1Q96SZ6 601 aaKnown RBP16.49■□□□□ 0.23
HDAC6-218ENST00000470942 FAM126AQ9BYI3 521 aaPredicted RBP16.49■□□□□ 0.23
HDAC6-218ENST00000470942 CLIC5Q9NZA1 410 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 RASAL2Q9UJF2 1139 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 PCDHGA2Q9Y5H1 932 aa16.49■□□□□ 0.23
HDAC6-218ENST00000470942 ATG13O75143 517 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 TDGF1P13385 188 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 PRKCSHP14314 528 aaPredicted RBP16.48■□□□□ 0.23
HDAC6-218ENST00000470942 USP8P40818 1118 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 SLC6A11P48066 632 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 RGS7P49802 495 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 ZNF132P52740 706 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 GAD2Q05329 585 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 MAN2A1Q16706 1144 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 ARHGAP44Q17R89 818 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 EXOC3L4Q17RC7 722 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 FBXO43Q4G163 708 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 BTBD8Q5XKL5 378 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 PM20D1Q6GTS8 502 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 PKN3Q6P5Z2 889 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 GJB7Q6PEY0 223 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 HTR3DQ70Z44 454 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 ENOSF1Q7L5Y1 443 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 ZNF276Q8N554 614 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 SECISBP2LQ93073 1101 aaKnown RBP16.48■□□□□ 0.23
HDAC6-218ENST00000470942 FAM81BQ96LP2 452 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 ZSWIM1Q9BR11 485 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 C2orf42Q9NWW7 574 aa16.48■□□□□ 0.23
HDAC6-218ENST00000470942 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.48■□□□□ 0.23
HDAC6-218ENST00000470942 KIAA1549LQ6ZVL6 1849 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 GTPBP10A4D1E9 387 aaKnown RBP16.47■□□□□ 0.23
HDAC6-218ENST00000470942 PIK3R2O00459 728 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 PES1O00541 588 aaKnown RBP16.47■□□□□ 0.23
HDAC6-218ENST00000470942 HMBSP08397 361 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 APBA1Q02410 837 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 GAB4Q2WGN9 574 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 ANO4Q32M45 955 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 PKDCCQ504Y2 493 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 CT47A1Q5JQC4 288 aaPredicted RBP16.47■□□□□ 0.23
HDAC6-218ENST00000470942 HEATR6Q6AI08 1181 aaKnown RBP16.47■□□□□ 0.23
HDAC6-218ENST00000470942 ZBTB44Q8NCP5 570 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 RPLP0P6Q8NHW5 317 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 KCTD13Q8WZ19 329 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 EZH1Q92800 747 aaPredicted RBP16.47■□□□□ 0.23
HDAC6-218ENST00000470942 NELL1Q92832 810 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 PNKPQ96T60 521 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 TUBGCP2Q9BSJ2 902 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 SPHK2Q9NRA0 654 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 APEX2Q9UBZ4 518 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 SLC8A2Q9UPR5 921 aa16.47■□□□□ 0.23
HDAC6-218ENST00000470942 RIF1Q5UIP0 2472 aaKnown RBP16.47■□□□□ 0.23
HDAC6-218ENST00000470942 CHURC1-FNTBB4DL54 471 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 KCNJ18B7U540 433 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 K7ESF4 209 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 PAPSS2O95340 614 aaPredicted RBP16.46■□□□□ 0.23
HDAC6-218ENST00000470942 APODP05090 189 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 PON1P27169 355 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 FNTBP49356 437 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 SEC13P55735 322 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 COG7P83436 770 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 KDSRQ06136 332 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 KCNJ12Q14500 433 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 VWA3BQ502W6 1294 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 PMF1Q6P1K2 205 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 SASS6Q6UVJ0 657 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 TMEM25Q86YD3 366 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 NAT16Q8N8M0 369 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 CCDC26Q8TAB7 109 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 SLC35F5Q8WV83 523 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 NDST4Q9H3R1 872 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 SAMSN1Q9NSI8 373 aaKnown RBP16.46■□□□□ 0.23
HDAC6-218ENST00000470942 MARCH2Q9P0N8 246 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 STRIP2Q9ULQ0 834 aa16.46■□□□□ 0.23
HDAC6-218ENST00000470942 CNTN6Q9UQ52 1028 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms