RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 ATICP31939 592 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 BRCC3P46736 316 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 RAP1GAPP47736 663 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 SLC11A1P49279 550 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 AARSP49588 968 aaKnown RBP eCLIP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 RABGGTBP53611 331 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 ADKP55263 362 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 JAM2P57087 298 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 ETF1P62495 437 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 RNASELQ05823 741 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 CETN1Q12798 172 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 ARHGAP44Q17R89 818 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 SOWAHAQ2M3V2 549 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 ZNF699Q32M78 642 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 TIGD5Q53EQ6 642 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 FIGNQ5HY92 759 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 RNF43Q68DV7 783 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 SCARA5Q6ZMJ2 495 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 LIMS2Q7Z4I7 341 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 LRRC43Q8N309 656 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 TAB3Q8N5C8 712 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 LRRC52Q8N7C0 313 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 UBR7Q8N806 425 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 FAM169BQ8N8A8 192 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 C19orf47Q8N9M1 422 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 TC2NQ8N9U0 490 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 C12orf50Q8NA57 414 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 KCT2Q8NC54 265 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 NEK11Q8NG66 645 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 URGCPQ8TCY9 931 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 NT5C1BQ96P26 610 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 UBL7Q96S82 380 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 TM9SF2Q99805 663 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 SMYD3Q9H7B4 428 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 ACP6Q9NPH0 428 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 FBXL5Q9UKA1 691 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 CAPN11Q9UMQ6 739 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 AP4E1Q9UPM8 1137 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 SNX9Q9Y5X1 595 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 RALGAPA2Q2PPJ7 1873 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 CHD7Q9P2D1 2997 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 PTPRSQ13332 1948 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 SLC22A31A6NKX4 558 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 LRRC53A6NM62 1247 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 F8VZ95 297 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 FOXN3O00409 490 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 SMAD7O15105 426 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 RRP9O43818 475 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 ZNF500O60304 480 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 MFAP3LO75121 409 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 EFEMP2O95967 443 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 PGRP06401 933 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 RPL9P32969 192 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 OR1G1P47890 313 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 TAF6P49848 677 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 BCAR1P56945 870 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 GCNT1Q02742 428 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 SERINC3Q13530 473 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 CUL2Q13617 745 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 RAPGEF1Q13905 1077 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 RAB33AQ14088 237 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 BTG3Q14201 252 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 DRAP1Q14919 205 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 CCDC142Q17RM4 750 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 ZNF667Q5HYK9 610 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 CDCP2Q5VXM1 449 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 WDR59Q6PJI9 974 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 DTX1Q86Y01 620 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 MCATQ8IVS2 390 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 CMTR2Q8IYT2 770 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 C2CD4AQ8NCU7 369 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 OLIG1Q8TAK6 271 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 PHOSPHO2Q8TCD6 241 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 KIAA1524Q8TCG1 905 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 KBTBD7Q8WVZ9 684 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 SHC3Q92529 594 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 RNPC3Q96LT9 517 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 FAM193BQ96PV7 902 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 TWNKQ96RR1 684 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 SLC9A7Q96T83 725 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 YME1L1Q96TA2 773 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 MRPL45Q9BRJ2 306 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 VN1R3Q9BXE9 311 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 MRPL9Q9BYD2 267 aaKnown RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 GPR62Q9BZJ7 368 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 IMPG2Q9BZV3 1241 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 GDAP2Q9NXN4 497 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 CEP72Q9P209 647 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 HMGXB4Q9UGU5 601 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 L1RE1Q9UN81 338 aa5.04□□□□□ -1.6
SF3B1-208ENST00000470268 TIMM13Q9Y5L4 95 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-208ENST00000470268 A0A1W2PQJ5 194 aa5.03□□□□□ -1.6
SF3B1-208ENST00000470268 TMEM189-UBE2V1I3L0A0 370 aa5.03□□□□□ -1.6
SF3B1-208ENST00000470268 M0QZQ0 153 aa5.03□□□□□ -1.6
SF3B1-208ENST00000470268 CYB561D2O14569 222 aa5.03□□□□□ -1.6
SF3B1-208ENST00000470268 CITO14578 2027 aa5.03□□□□□ -1.6
SF3B1-208ENST00000470268 CLSTN1O94985 981 aa5.03□□□□□ -1.6
SF3B1-208ENST00000470268 WNT11O96014 354 aa5.03□□□□□ -1.6
SF3B1-208ENST00000470268 ALDH2P05091 517 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms